Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
VCPP55072 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VCPP55072 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.2■□□□□ 0.34
VCPP55072 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
VCPP55072 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.2■□□□□ 0.34
VCPP55072 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.2■□□□□ 0.34
VCPP55072 AP006294.1-201ENST00000415407 339 ntBASIC17.2■□□□□ 0.34
VCPP55072 AL353779.1-201ENST00000434793 351 ntBASIC17.2■□□□□ 0.34
VCPP55072 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.2■□□□□ 0.34
VCPP55072 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.2■□□□□ 0.34
VCPP55072 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.2■□□□□ 0.34
VCPP55072 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
VCPP55072 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.2■□□□□ 0.34
VCPP55072 AC027307.2-201ENST00000591252 911 ntBASIC17.2■□□□□ 0.34
VCPP55072 AC008738.7-201ENST00000609744 511 ntBASIC17.2■□□□□ 0.34
VCPP55072 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VCPP55072 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.2■□□□□ 0.34
VCPP55072 REXO1L6P-201ENST00000603433 1515 ntBASIC17.2■□□□□ 0.34
VCPP55072 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
VCPP55072 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VCPP55072 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VCPP55072 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.2■□□□□ 0.34
VCPP55072 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.2■□□□□ 0.34
VCPP55072 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.19■□□□□ 0.34
VCPP55072 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.19■□□□□ 0.34
VCPP55072 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VCPP55072 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.19■□□□□ 0.34
VCPP55072 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 FAM86MP-201ENST00000340703 885 ntBASIC17.19■□□□□ 0.34
VCPP55072 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VCPP55072 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.19■□□□□ 0.34
VCPP55072 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.19■□□□□ 0.34
VCPP55072 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.19■□□□□ 0.34
VCPP55072 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.19■□□□□ 0.34
VCPP55072 FAM8A2P-201ENST00000528813 1142 ntBASIC17.19■□□□□ 0.34
VCPP55072 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 AC104794.3-201ENST00000566840 1248 ntBASIC17.19■□□□□ 0.34
VCPP55072 MIR3909-201ENST00000579518 119 ntBASIC17.19■□□□□ 0.34
VCPP55072 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.19■□□□□ 0.34
VCPP55072 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.19■□□□□ 0.34
VCPP55072 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.19■□□□□ 0.34
VCPP55072 AC008267.7-201ENST00000624570 1194 ntBASIC17.19■□□□□ 0.34
VCPP55072 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.19■□□□□ 0.34
VCPP55072 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.19■□□□□ 0.34
VCPP55072 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VCPP55072 AC006449.6-201ENST00000612330 2296 ntBASIC17.19■□□□□ 0.34
VCPP55072 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.34
VCPP55072 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCPP55072 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
VCPP55072 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.18■□□□□ 0.34
VCPP55072 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.18■□□□□ 0.34
VCPP55072 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.18■□□□□ 0.34
VCPP55072 PCGF3-213ENST00000620529 1899 ntBASIC17.18■□□□□ 0.34
VCPP55072 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.18■□□□□ 0.34
VCPP55072 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.18■□□□□ 0.34
VCPP55072 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
VCPP55072 MIR346-201ENST00000362234 95 ntBASIC17.18■□□□□ 0.34
VCPP55072 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 AC004945.1-201ENST00000416738 983 ntBASIC17.18■□□□□ 0.34
VCPP55072 AC009477.1-201ENST00000452936 217 ntBASIC17.18■□□□□ 0.34
VCPP55072 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.18■□□□□ 0.34
VCPP55072 AL138918.1-201ENST00000568306 659 ntBASIC17.18■□□□□ 0.34
VCPP55072 AC009407.1-201ENST00000568958 598 ntBASIC17.18■□□□□ 0.34
VCPP55072 MIR4259-201ENST00000584466 101 ntBASIC17.18■□□□□ 0.34
VCPP55072 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.18■□□□□ 0.34
VCPP55072 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.18■□□□□ 0.34
VCPP55072 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
VCPP55072 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.18■□□□□ 0.34
VCPP55072 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.18■□□□□ 0.34
VCPP55072 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.18■□□□□ 0.34
VCPP55072 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCPP55072 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms