Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.83■□□□□ 0.28
COL4A4P53420 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
COL4A4P53420 NUS1P3-201ENST00000423502 862 ntBASIC16.83■□□□□ 0.28
COL4A4P53420 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.83■□□□□ 0.28
COL4A4P53420 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
COL4A4P53420 AP006547.1-201ENST00000563435 692 ntBASIC16.83■□□□□ 0.28
COL4A4P53420 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.83■□□□□ 0.28
COL4A4P53420 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
COL4A4P53420 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.83■□□□□ 0.28
COL4A4P53420 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.83■□□□□ 0.28
COL4A4P53420 SNX1-214ENST00000625244 324 ntTSL 5 BASIC16.83■□□□□ 0.28
COL4A4P53420 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.83■□□□□ 0.28
COL4A4P53420 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 AC092364.2-201ENST00000596710 2692 ntBASIC16.83■□□□□ 0.28
COL4A4P53420 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.83■□□□□ 0.28
COL4A4P53420 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.83■□□□□ 0.28
COL4A4P53420 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A4P53420 AP001282.1-201ENST00000531301 1499 ntBASIC16.82■□□□□ 0.28
COL4A4P53420 KRT8P19-201ENST00000551916 1455 ntBASIC16.82■□□□□ 0.28
COL4A4P53420 FZD10-202ENST00000539839 3282 ntBASIC16.82■□□□□ 0.28
COL4A4P53420 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL4A4P53420 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.82■□□□□ 0.28
COL4A4P53420 RPS2P36-201ENST00000456516 831 ntBASIC16.82■□□□□ 0.28
COL4A4P53420 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.82■□□□□ 0.28
COL4A4P53420 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC16.82■□□□□ 0.28
COL4A4P53420 AP001063.1-201ENST00000568332 529 ntBASIC16.82■□□□□ 0.28
COL4A4P53420 MIR4741-201ENST00000579822 90 ntBASIC16.82■□□□□ 0.28
COL4A4P53420 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A4P53420 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A4P53420 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A4P53420 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL4A4P53420 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A4P53420 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL4A4P53420 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A4P53420 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.82■□□□□ 0.28
COL4A4P53420 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A4P53420 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.82■□□□□ 0.28
COL4A4P53420 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
COL4A4P53420 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A4P53420 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A4P53420 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 C2orf27AP3-201ENST00000434123 579 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 CNN2P10-201ENST00000443067 918 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 AL591846.1-201ENST00000451736 433 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
COL4A4P53420 ADM-202ENST00000524948 584 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 AP001258.2-201ENST00000529891 490 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 AC078819.1-201ENST00000547454 765 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 AC012085.1-201ENST00000548270 765 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 HNRNPUP1-201ENST00000554987 333 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A4P53420 AC097724.1-201ENST00000609581 426 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COL4A4P53420 AL354718.3-201ENST00000616414 581 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 CR382287.1-201ENST00000623954 586 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
COL4A4P53420 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A4P53420 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A4P53420 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
COL4A4P53420 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A4P53420 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms