Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.8■□□□□ 0.6
MRE11P49959 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.8■□□□□ 0.6
MRE11P49959 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.8■□□□□ 0.6
MRE11P49959 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC18.8■□□□□ 0.6
MRE11P49959 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 LINC01144-201ENST00000626198 1710 ntBASIC18.8■□□□□ 0.6
MRE11P49959 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MRE11P49959 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
MRE11P49959 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC18.8■□□□□ 0.6
MRE11P49959 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MRE11P49959 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MRE11P49959 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MRE11P49959 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
MRE11P49959 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.79■□□□□ 0.6
MRE11P49959 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
MRE11P49959 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
MRE11P49959 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
MRE11P49959 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
MRE11P49959 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MRE11P49959 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MRE11P49959 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.79■□□□□ 0.6
MRE11P49959 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.79■□□□□ 0.6
MRE11P49959 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
MRE11P49959 AP003733.1-201ENST00000491725 852 ntBASIC18.79■□□□□ 0.6
MRE11P49959 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.79■□□□□ 0.6
MRE11P49959 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.79■□□□□ 0.6
MRE11P49959 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.79■□□□□ 0.6
MRE11P49959 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 SPCS2P1-201ENST00000561636 679 ntBASIC18.79■□□□□ 0.6
MRE11P49959 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.79■□□□□ 0.6
MRE11P49959 AL136038.4-201ENST00000603606 1261 ntBASIC18.79■□□□□ 0.6
MRE11P49959 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MRE11P49959 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
MRE11P49959 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MRE11P49959 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.79■□□□□ 0.6
MRE11P49959 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MRE11P49959 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 AL353593.2-201ENST00000602529 1483 ntBASIC18.78■□□□□ 0.6
MRE11P49959 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
MRE11P49959 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC18.78■□□□□ 0.6
MRE11P49959 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.78■□□□□ 0.6
MRE11P49959 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC18.78■□□□□ 0.6
MRE11P49959 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.78■□□□□ 0.6
MRE11P49959 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.78■□□□□ 0.6
MRE11P49959 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
MRE11P49959 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.78■□□□□ 0.6
MRE11P49959 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.78■□□□□ 0.6
MRE11P49959 KRT18P3-201ENST00000451602 1288 ntBASIC18.78■□□□□ 0.6
MRE11P49959 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.78■□□□□ 0.6
MRE11P49959 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.78■□□□□ 0.6
MRE11P49959 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.78■□□□□ 0.6
MRE11P49959 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.78■□□□□ 0.6
MRE11P49959 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
MRE11P49959 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.78■□□□□ 0.6
MRE11P49959 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC18.78■□□□□ 0.6
MRE11P49959 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.78■□□□□ 0.6
MRE11P49959 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
MRE11P49959 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC18.78■□□□□ 0.6
MRE11P49959 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms