Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC26.24■■□□□ 1.79
CUX1P39880 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 MFF-204ENST00000353339 2186 ntTSL 5 BASIC26.24■■□□□ 1.79
CUX1P39880 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC26.23■■□□□ 1.79
CUX1P39880 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC26.23■■□□□ 1.79
CUX1P39880 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC26.23■■□□□ 1.79
CUX1P39880 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC26.23■■□□□ 1.79
CUX1P39880 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 GGCT-203ENST00000409144 836 ntTSL 2 BASIC26.23■■□□□ 1.79
CUX1P39880 EIF3FP3-201ENST00000434851 1086 ntBASIC26.23■■□□□ 1.79
CUX1P39880 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC26.23■■□□□ 1.79
CUX1P39880 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC26.23■■□□□ 1.79
CUX1P39880 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
CUX1P39880 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CUX1P39880 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC26.23■■□□□ 1.79
CUX1P39880 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC26.23■■□□□ 1.79
CUX1P39880 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
CUX1P39880 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
CUX1P39880 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
CUX1P39880 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
CUX1P39880 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
CUX1P39880 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 SNX21-203ENST00000372541 771 ntTSL 2 BASIC26.22■■□□□ 1.79
CUX1P39880 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
CUX1P39880 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC26.22■■□□□ 1.79
CUX1P39880 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC26.22■■□□□ 1.79
CUX1P39880 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC26.22■■□□□ 1.79
CUX1P39880 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC26.22■■□□□ 1.79
CUX1P39880 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
CUX1P39880 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
CUX1P39880 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CUX1P39880 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CUX1P39880 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC26.21■■□□□ 1.79
CUX1P39880 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC26.21■■□□□ 1.79
CUX1P39880 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CUX1P39880 NUS1P3-201ENST00000423502 862 ntBASIC26.21■■□□□ 1.79
CUX1P39880 PTPA-218ENST00000435132 618 ntTSL 2 BASIC26.21■■□□□ 1.79
CUX1P39880 MIR4706-201ENST00000582134 82 ntBASIC26.21■■□□□ 1.79
CUX1P39880 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CUX1P39880 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC26.21■■□□□ 1.79
CUX1P39880 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
CUX1P39880 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CUX1P39880 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
CUX1P39880 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CUX1P39880 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
CUX1P39880 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC26.21■■□□□ 1.79
CUX1P39880 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC26.2■■□□□ 1.79
CUX1P39880 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CUX1P39880 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
CUX1P39880 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
CUX1P39880 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
CUX1P39880 HINT2P1-201ENST00000419438 481 ntBASIC26.2■■□□□ 1.79
CUX1P39880 AC126915.1-201ENST00000522847 1038 ntBASIC26.2■■□□□ 1.79
CUX1P39880 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC26.2■■□□□ 1.79
CUX1P39880 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC26.2■■□□□ 1.78
CUX1P39880 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CUX1P39880 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CUX1P39880 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CUX1P39880 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CUX1P39880 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC26.2■■□□□ 1.78
CUX1P39880 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
CUX1P39880 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CUX1P39880 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
CUX1P39880 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CUX1P39880 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 SMS-201ENST00000379404 1174 ntTSL 3 BASIC26.19■■□□□ 1.78
CUX1P39880 POM121L8P-201ENST00000417732 1281 ntBASIC26.19■■□□□ 1.78
CUX1P39880 KRTAP19-9P-201ENST00000421795 191 ntBASIC26.19■■□□□ 1.78
CUX1P39880 NKAIN1P1-201ENST00000435754 582 ntBASIC26.19■■□□□ 1.78
CUX1P39880 POM121L9P-203ENST00000441984 1285 ntBASIC26.19■■□□□ 1.78
CUX1P39880 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC26.19■■□□□ 1.78
CUX1P39880 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC26.19■■□□□ 1.78
CUX1P39880 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 FLJ38576-201ENST00000623820 2459 ntBASIC26.19■■□□□ 1.78
CUX1P39880 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
CUX1P39880 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms