Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SLC6A4P31645 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.4■□□□□ 0.22
SLC6A4P31645 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SLC6A4P31645 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SLC6A4P31645 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
SLC6A4P31645 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.4■□□□□ 0.22
SLC6A4P31645 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC6A4P31645 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SLC6A4P31645 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.22
SLC6A4P31645 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SLC6A4P31645 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
SLC6A4P31645 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.39■□□□□ 0.21
SLC6A4P31645 AC011477.6-201ENST00000604980 1927 ntBASIC16.39■□□□□ 0.21
SLC6A4P31645 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.39■□□□□ 0.21
SLC6A4P31645 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC6A4P31645 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SLC6A4P31645 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SLC6A4P31645 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.39■□□□□ 0.21
SLC6A4P31645 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC6A4P31645 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.39■□□□□ 0.21
SLC6A4P31645 AC092337.1-201ENST00000568699 1129 ntBASIC16.39■□□□□ 0.21
SLC6A4P31645 SPDYE22P-201ENST00000582158 798 ntBASIC16.39■□□□□ 0.21
SLC6A4P31645 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SLC6A4P31645 AC097359.3-201ENST00000603982 1210 ntBASIC16.39■□□□□ 0.21
SLC6A4P31645 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.39■□□□□ 0.21
SLC6A4P31645 AF228730.6-201ENST00000641497 218 ntBASIC16.39■□□□□ 0.21
SLC6A4P31645 AC084121.3-201ENST00000641716 218 ntBASIC16.39■□□□□ 0.21
SLC6A4P31645 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 AC007541.1-201ENST00000570282 1469 ntBASIC16.39■□□□□ 0.21
SLC6A4P31645 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC6A4P31645 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SLC6A4P31645 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.38■□□□□ 0.21
SLC6A4P31645 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
SLC6A4P31645 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.38■□□□□ 0.21
SLC6A4P31645 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 API5-211ENST00000534695 560 ntTSL 5 BASIC16.38■□□□□ 0.21
SLC6A4P31645 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
SLC6A4P31645 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 AC023310.3-201ENST00000557027 670 ntBASIC16.38■□□□□ 0.21
SLC6A4P31645 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.38■□□□□ 0.21
SLC6A4P31645 AC100756.1-201ENST00000562736 682 ntBASIC16.38■□□□□ 0.21
SLC6A4P31645 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.38■□□□□ 0.21
SLC6A4P31645 AC138749.3-201ENST00000567691 622 ntBASIC16.38■□□□□ 0.21
SLC6A4P31645 AC116165.1-201ENST00000611806 668 ntBASIC16.38■□□□□ 0.21
SLC6A4P31645 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SLC6A4P31645 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 AC112504.1-201ENST00000623415 1841 ntBASIC16.38■□□□□ 0.21
SLC6A4P31645 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SLC6A4P31645 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC6A4P31645 AC010491.1-201ENST00000563101 2797 ntBASIC16.38■□□□□ 0.21
SLC6A4P31645 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SLC6A4P31645 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
SLC6A4P31645 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms