Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.29■□□□□ 0.52
SMARCA1P28370 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.28■□□□□ 0.52
SMARCA1P28370 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.28■□□□□ 0.52
SMARCA1P28370 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SMARCA1P28370 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SMARCA1P28370 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.28■□□□□ 0.52
SMARCA1P28370 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.28■□□□□ 0.52
SMARCA1P28370 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.28■□□□□ 0.52
SMARCA1P28370 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SMARCA1P28370 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.28■□□□□ 0.52
SMARCA1P28370 TERF1P3-201ENST00000505638 1227 ntBASIC18.28■□□□□ 0.52
SMARCA1P28370 AC093004.1-201ENST00000508850 424 ntBASIC18.28■□□□□ 0.52
SMARCA1P28370 AC099568.2-201ENST00000609194 695 ntBASIC18.28■□□□□ 0.52
SMARCA1P28370 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.28■□□□□ 0.52
SMARCA1P28370 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.28■□□□□ 0.52
SMARCA1P28370 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
SMARCA1P28370 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 AL391825.1-201ENST00000457671 1364 ntBASIC18.28■□□□□ 0.52
SMARCA1P28370 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.28■□□□□ 0.52
SMARCA1P28370 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMARCA1P28370 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.27■□□□□ 0.52
SMARCA1P28370 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.27■□□□□ 0.52
SMARCA1P28370 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.27■□□□□ 0.52
SMARCA1P28370 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.27■□□□□ 0.52
SMARCA1P28370 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.27■□□□□ 0.52
SMARCA1P28370 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 PIN1P1-201ENST00000412108 996 ntBASIC18.27■□□□□ 0.52
SMARCA1P28370 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC18.27■□□□□ 0.52
SMARCA1P28370 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 AL353779.1-201ENST00000434793 351 ntBASIC18.27■□□□□ 0.52
SMARCA1P28370 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.27■□□□□ 0.52
SMARCA1P28370 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.27■□□□□ 0.52
SMARCA1P28370 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.27■□□□□ 0.52
SMARCA1P28370 RARRES2P5-201ENST00000564013 466 ntBASIC18.27■□□□□ 0.52
SMARCA1P28370 RRP7BP-205ENST00000566851 833 ntBASIC18.27■□□□□ 0.52
SMARCA1P28370 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.27■□□□□ 0.52
SMARCA1P28370 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.27■□□□□ 0.52
SMARCA1P28370 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SMARCA1P28370 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMARCA1P28370 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
SMARCA1P28370 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.51
SMARCA1P28370 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SMARCA1P28370 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
SMARCA1P28370 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SMARCA1P28370 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SMARCA1P28370 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SMARCA1P28370 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
SMARCA1P28370 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.27■□□□□ 0.51
SMARCA1P28370 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SMARCA1P28370 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
SMARCA1P28370 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
SMARCA1P28370 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.26■□□□□ 0.51
SMARCA1P28370 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.26■□□□□ 0.51
SMARCA1P28370 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.26■□□□□ 0.51
SMARCA1P28370 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SMARCA1P28370 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
SMARCA1P28370 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMARCA1P28370 DFFBP1-201ENST00000433250 979 ntBASIC18.26■□□□□ 0.51
SMARCA1P28370 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.26■□□□□ 0.51
SMARCA1P28370 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SMARCA1P28370 AC138761.1-201ENST00000584393 385 ntBASIC18.26■□□□□ 0.51
SMARCA1P28370 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.26■□□□□ 0.51
SMARCA1P28370 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SMARCA1P28370 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms