Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.25■□□□□ 0.19
VCANP13611 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.25■□□□□ 0.19
VCANP13611 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VCANP13611 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VCANP13611 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.24■□□□□ 0.19
VCANP13611 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.24■□□□□ 0.19
VCANP13611 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 CNN2P10-201ENST00000443067 918 ntBASIC16.24■□□□□ 0.19
VCANP13611 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC16.24■□□□□ 0.19
VCANP13611 AC079112.1-201ENST00000454972 939 ntBASIC16.24■□□□□ 0.19
VCANP13611 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.24■□□□□ 0.19
VCANP13611 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.24■□□□□ 0.19
VCANP13611 MIR5196-201ENST00000578146 115 ntBASIC16.24■□□□□ 0.19
VCANP13611 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.24■□□□□ 0.19
VCANP13611 AL354751.1-201ENST00000412768 1863 ntBASIC16.24■□□□□ 0.19
VCANP13611 U82695.1-201ENST00000635752 1889 ntBASIC16.24■□□□□ 0.19
VCANP13611 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.24■□□□□ 0.19
VCANP13611 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VCANP13611 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC16.24■□□□□ 0.19
VCANP13611 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.24■□□□□ 0.19
VCANP13611 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.24■□□□□ 0.19
VCANP13611 KRT8P35-201ENST00000483942 1338 ntBASIC16.23■□□□□ 0.19
VCANP13611 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
VCANP13611 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
VCANP13611 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC16.23■□□□□ 0.19
VCANP13611 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.23■□□□□ 0.19
VCANP13611 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.23■□□□□ 0.19
VCANP13611 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
VCANP13611 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.23■□□□□ 0.19
VCANP13611 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VCANP13611 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.23■□□□□ 0.19
VCANP13611 AC134043.2-201ENST00000624206 2238 ntBASIC16.23■□□□□ 0.19
VCANP13611 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 REXO1L1P-202ENST00000608646 1974 ntBASIC16.23■□□□□ 0.19
VCANP13611 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VCANP13611 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.23■□□□□ 0.19
VCANP13611 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.23■□□□□ 0.19
VCANP13611 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 FO393414.2-201ENST00000405153 598 ntBASIC16.23■□□□□ 0.19
VCANP13611 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC16.23■□□□□ 0.19
VCANP13611 AC243562.2-201ENST00000561247 970 ntBASIC16.23■□□□□ 0.19
VCANP13611 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.23■□□□□ 0.19
VCANP13611 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC16.23■□□□□ 0.19
VCANP13611 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC16.23■□□□□ 0.19
VCANP13611 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 AC013355.1-201ENST00000562625 723 ntBASIC16.23■□□□□ 0.19
VCANP13611 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.23■□□□□ 0.19
VCANP13611 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.23■□□□□ 0.19
VCANP13611 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC16.23■□□□□ 0.19
VCANP13611 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VCANP13611 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.22■□□□□ 0.19
VCANP13611 AC074138.1-201ENST00000611182 1303 ntBASIC16.22■□□□□ 0.19
VCANP13611 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
VCANP13611 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 UROS-201ENST00000368774 744 ntTSL 2 BASIC16.22■□□□□ 0.19
VCANP13611 AL008707.1-201ENST00000422498 534 ntBASIC16.22■□□□□ 0.19
VCANP13611 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.22■□□□□ 0.19
VCANP13611 REEP5-205ENST00000504247 480 ntTSL 5 BASIC16.22■□□□□ 0.19
VCANP13611 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC16.22■□□□□ 0.19
VCANP13611 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.22■□□□□ 0.19
VCANP13611 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.22■□□□□ 0.19
VCANP13611 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC16.22■□□□□ 0.19
VCANP13611 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms