Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.83■□□□□ 0.92
COL3A1P02461 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL3A1P02461 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL3A1P02461 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC20.83■□□□□ 0.92
COL3A1P02461 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL3A1P02461 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.83■□□□□ 0.92
COL3A1P02461 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL3A1P02461 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC20.83■□□□□ 0.92
COL3A1P02461 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL3A1P02461 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL3A1P02461 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 AGER-206ENST00000375070 1463 ntTSL 5 BASIC20.82■□□□□ 0.92
COL3A1P02461 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.82■□□□□ 0.92
COL3A1P02461 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
COL3A1P02461 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.82■□□□□ 0.92
COL3A1P02461 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.82■□□□□ 0.92
COL3A1P02461 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC20.82■□□□□ 0.92
COL3A1P02461 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC20.82■□□□□ 0.92
COL3A1P02461 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.82■□□□□ 0.92
COL3A1P02461 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
COL3A1P02461 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 GPR39-203ENST00000622084 900 ntTSL 5 BASIC20.82■□□□□ 0.92
COL3A1P02461 ABBA01031660.1-201ENST00000635219 756 ntBASIC20.82■□□□□ 0.92
COL3A1P02461 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.82■□□□□ 0.92
COL3A1P02461 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
COL3A1P02461 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL3A1P02461 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
COL3A1P02461 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
COL3A1P02461 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC20.81■□□□□ 0.92
COL3A1P02461 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.81■□□□□ 0.92
COL3A1P02461 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC20.81■□□□□ 0.92
COL3A1P02461 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC20.81■□□□□ 0.92
COL3A1P02461 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC20.81■□□□□ 0.92
COL3A1P02461 GNRHR2-203ENST00000581100 1187 ntBASIC20.81■□□□□ 0.92
COL3A1P02461 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.81■□□□□ 0.92
COL3A1P02461 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
COL3A1P02461 MSTO2P-201ENST00000314835 1709 ntBASIC20.81■□□□□ 0.92
COL3A1P02461 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.81■□□□□ 0.92
COL3A1P02461 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
COL3A1P02461 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC20.81■□□□□ 0.92
COL3A1P02461 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.81■□□□□ 0.92
COL3A1P02461 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
COL3A1P02461 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
COL3A1P02461 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC20.81■□□□□ 0.92
COL3A1P02461 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC20.81■□□□□ 0.92
COL3A1P02461 AC119751.2-201ENST00000504529 210 ntBASIC20.81■□□□□ 0.92
COL3A1P02461 AC104596.2-201ENST00000512793 793 ntBASIC20.81■□□□□ 0.92
COL3A1P02461 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.81■□□□□ 0.92
COL3A1P02461 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC20.81■□□□□ 0.92
COL3A1P02461 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC20.81■□□□□ 0.92
COL3A1P02461 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL3A1P02461 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
COL3A1P02461 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
COL3A1P02461 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
COL3A1P02461 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 AC063926.2-201ENST00000623766 1308 ntBASIC20.8■□□□□ 0.92
COL3A1P02461 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
COL3A1P02461 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 AC105250.1-201ENST00000509378 2057 ntBASIC20.8■□□□□ 0.92
COL3A1P02461 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 SOCS2P1-201ENST00000417727 557 ntBASIC20.8■□□□□ 0.92
COL3A1P02461 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL3A1P02461 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC20.8■□□□□ 0.92
COL3A1P02461 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.8■□□□□ 0.92
COL3A1P02461 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC20.8■□□□□ 0.92
COL3A1P02461 AC025181.2-201ENST00000606994 802 ntBASIC20.8■□□□□ 0.92
COL3A1P02461 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms