Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 AL589739.1-201ENST00000607720 493 ntBASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
TMX2-CTNND1H3BSU7 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 AL596325.1-201ENST00000563991 1082 ntBASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TMX2-CTNND1H3BSU7 OR6D1P-203ENST00000641209 4860 ntBASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 CU639417.3-201ENST00000624240 1404 ntBASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 AL353779.1-201ENST00000434793 351 ntBASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 SPTLC1P1-201ENST00000447199 261 ntBASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 RN7SL692P-201ENST00000464677 288 ntBASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 RN7SL828P-201ENST00000607615 303 ntBASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 TNRC18P2-201ENST00000417666 2714 ntBASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.79■□□□□ 0.12
TMX2-CTNND1H3BSU7 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 CROCCP1-201ENST00000426910 5675 ntBASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
TMX2-CTNND1H3BSU7 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms