Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 BCRP2-202ENST00000447763 634 ntBASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 BCRP6-201ENST00000510112 632 ntBASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 BCRP7-201ENST00000511549 544 ntBASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AP001889.1-201ENST00000525414 633 ntBASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AL359711.2-201ENST00000563105 872 ntBASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AC009486.1-201ENST00000569860 813 ntBASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AC244093.1-201ENST00000610837 814 ntBASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 AC046158.3-201ENST00000624947 2558 ntBASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 SOCS2P1-201ENST00000417727 557 ntBASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 AC134915.1-201ENST00000426461 574 ntBASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 NFIC-211ENST00000641145 8399 ntBASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
PCDHGA1Q9Y5H4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms