Protein–RNA interactions for Protein: Q9UHC9

NPC1L1, Niemann-Pick C1-like protein 1, humanhuman

Predictions only

Length 1,359 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1Q9UHC9 AC138761.1-201ENST00000584393 385 ntBASIC21.32■■□□□ 1
NPC1L1Q9UHC9 BRI3BPP1-201ENST00000594224 787 ntBASIC21.32■■□□□ 1
NPC1L1Q9UHC9 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPC1L1Q9UHC9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC21.32■■□□□ 1
NPC1L1Q9UHC9 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 AC036164.1-201ENST00000570544 333 ntBASIC21.31■■□□□ 1
NPC1L1Q9UHC9 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 AC093726.1-201ENST00000608064 963 ntBASIC21.31■■□□□ 1
NPC1L1Q9UHC9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 MFF-204ENST00000353339 2186 ntTSL 5 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 STK33-217ENST00000534493 1895 ntTSL 2 BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
NPC1L1Q9UHC9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 AC009090.5-201ENST00000624886 2285 ntBASIC21.3■■□□□ 1
NPC1L1Q9UHC9 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 COX20P2-201ENST00000452636 358 ntBASIC21.3■■□□□ 1
NPC1L1Q9UHC9 RN7SL399P-201ENST00000471648 279 ntBASIC21.3■■□□□ 1
NPC1L1Q9UHC9 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC21.3■■□□□ 1
NPC1L1Q9UHC9 AL662799.1-202ENST00000614205 422 ntBASIC21.3■■□□□ 1
NPC1L1Q9UHC9 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 AL645728.2-202ENST00000641679 227 ntBASIC21.3■■□□□ 1
NPC1L1Q9UHC9 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPC1L1Q9UHC9 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AC140912.1-201ENST00000577171 1054 ntBASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AC239800.4-201ENST00000603712 296 ntBASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AC004233.3-201ENST00000607794 1269 ntBASIC21.29■■□□□ 1
NPC1L1Q9UHC9 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AC079328.2-201ENST00000561241 3354 ntBASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AC090616.6-203ENST00000579186 1945 ntBASIC21.29■■□□□ 1
NPC1L1Q9UHC9 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC21.29■■□□□ 1
NPC1L1Q9UHC9 BCL2-203ENST00000589955 5011 ntBASIC21.28■■□□□ 1
NPC1L1Q9UHC9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 AC098850.1-201ENST00000419919 790 ntBASIC21.28■■□□□ 1
NPC1L1Q9UHC9 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC21.28■■□□□ 1
NPC1L1Q9UHC9 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms