Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AC023310.3-201ENST00000557027 670 ntBASIC17.2■□□□□ 0.34
CNTN3Q9P232 AC100756.1-201ENST00000562736 682 ntBASIC17.2■□□□□ 0.34
CNTN3Q9P232 AC138749.3-201ENST00000567691 622 ntBASIC17.2■□□□□ 0.34
CNTN3Q9P232 TP53TG3HP-202ENST00000569755 579 ntBASIC17.2■□□□□ 0.34
CNTN3Q9P232 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.2■□□□□ 0.34
CNTN3Q9P232 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.2■□□□□ 0.34
CNTN3Q9P232 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.2■□□□□ 0.34
CNTN3Q9P232 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.2■□□□□ 0.34
CNTN3Q9P232 LINC01115-203ENST00000606068 577 ntBASIC17.2■□□□□ 0.34
CNTN3Q9P232 AC116165.1-201ENST00000611806 668 ntBASIC17.2■□□□□ 0.34
CNTN3Q9P232 AC025048.6-201ENST00000634326 1161 ntBASIC17.2■□□□□ 0.34
CNTN3Q9P232 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CNTN3Q9P232 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CNTN3Q9P232 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CNTN3Q9P232 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.2■□□□□ 0.34
CNTN3Q9P232 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CNTN3Q9P232 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CNTN3Q9P232 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CNTN3Q9P232 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CNTN3Q9P232 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.2■□□□□ 0.34
CNTN3Q9P232 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CNTN3Q9P232 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 SLC7A15P-201ENST00000424028 1363 ntBASIC17.19■□□□□ 0.34
CNTN3Q9P232 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 AP005018.1-201ENST00000525475 301 ntBASIC17.19■□□□□ 0.34
CNTN3Q9P232 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 AC055876.2-201ENST00000531834 546 ntBASIC17.19■□□□□ 0.34
CNTN3Q9P232 TPRX2P-201ENST00000535362 881 ntBASIC17.19■□□□□ 0.34
CNTN3Q9P232 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 AC140912.1-201ENST00000577171 1054 ntBASIC17.19■□□□□ 0.34
CNTN3Q9P232 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 AC027307.3-201ENST00000594262 1100 ntBASIC17.19■□□□□ 0.34
CNTN3Q9P232 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CNTN3Q9P232 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.19■□□□□ 0.34
CNTN3Q9P232 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 MEP1AP4-201ENST00000423244 1087 ntBASIC17.18■□□□□ 0.34
CNTN3Q9P232 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 TIMM17BP1-201ENST00000545713 516 ntBASIC17.18■□□□□ 0.34
CNTN3Q9P232 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 AC097359.3-201ENST00000603982 1210 ntBASIC17.18■□□□□ 0.34
CNTN3Q9P232 AC099568.2-201ENST00000609194 695 ntBASIC17.18■□□□□ 0.34
CNTN3Q9P232 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 AC069224.1-201ENST00000566372 1715 ntBASIC17.18■□□□□ 0.34
CNTN3Q9P232 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CNTN3Q9P232 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
CNTN3Q9P232 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms