Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 PAUPAR-201ENST00000630360 2965 ntBASIC17.09■□□□□ 0.33
CISHQ9NSE2 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.08■□□□□ 0.33
CISHQ9NSE2 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.08■□□□□ 0.33
CISHQ9NSE2 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.08■□□□□ 0.33
CISHQ9NSE2 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.08■□□□□ 0.33
CISHQ9NSE2 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CISHQ9NSE2 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.08■□□□□ 0.32
CISHQ9NSE2 AZGP1P1-201ENST00000411909 902 ntBASIC17.08■□□□□ 0.32
CISHQ9NSE2 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.08■□□□□ 0.32
CISHQ9NSE2 TREML5P-201ENST00000421694 576 ntBASIC17.08■□□□□ 0.32
CISHQ9NSE2 HIST3H2BA-201ENST00000436555 524 ntBASIC17.08■□□□□ 0.32
CISHQ9NSE2 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.08■□□□□ 0.32
CISHQ9NSE2 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.08■□□□□ 0.32
CISHQ9NSE2 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.08■□□□□ 0.32
CISHQ9NSE2 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CISHQ9NSE2 AC073592.8-201ENST00000624126 511 ntBASIC17.08■□□□□ 0.32
CISHQ9NSE2 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.08■□□□□ 0.32
CISHQ9NSE2 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.08■□□□□ 0.32
CISHQ9NSE2 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.08■□□□□ 0.32
CISHQ9NSE2 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CISHQ9NSE2 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 MIR943-201ENST00000401286 94 ntBASIC17.07■□□□□ 0.32
CISHQ9NSE2 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 AC092580.3-201ENST00000430932 139 ntBASIC17.07■□□□□ 0.32
CISHQ9NSE2 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 AC097493.3-201ENST00000509725 367 ntBASIC17.07■□□□□ 0.32
CISHQ9NSE2 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 RFPL4AP1-201ENST00000530883 850 ntBASIC17.07■□□□□ 0.32
CISHQ9NSE2 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 AL158211.3-201ENST00000607385 239 ntBASIC17.07■□□□□ 0.32
CISHQ9NSE2 AC093512.1-201ENST00000617969 520 ntBASIC17.07■□□□□ 0.32
CISHQ9NSE2 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.07■□□□□ 0.32
CISHQ9NSE2 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CISHQ9NSE2 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.06■□□□□ 0.32
CISHQ9NSE2 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.06■□□□□ 0.32
CISHQ9NSE2 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CISHQ9NSE2 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CISHQ9NSE2 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CISHQ9NSE2 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CISHQ9NSE2 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.06■□□□□ 0.32
CISHQ9NSE2 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CISHQ9NSE2 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CISHQ9NSE2 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms