Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
MMP28Q9H239 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.28□□□□□ -0.12
MMP28Q9H239 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
MMP28Q9H239 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC14.28□□□□□ -0.12
MMP28Q9H239 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC14.28□□□□□ -0.12
MMP28Q9H239 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 EMBP1-201ENST00000458200 901 ntBASIC14.28□□□□□ -0.12
MMP28Q9H239 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.28□□□□□ -0.12
MMP28Q9H239 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.28□□□□□ -0.12
MMP28Q9H239 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC14.28□□□□□ -0.12
MMP28Q9H239 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC14.28□□□□□ -0.12
MMP28Q9H239 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.28□□□□□ -0.12
MMP28Q9H239 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.28□□□□□ -0.12
MMP28Q9H239 AC091304.2-201ENST00000564639 760 ntBASIC14.28□□□□□ -0.12
MMP28Q9H239 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
MMP28Q9H239 MIR5100-201ENST00000579544 119 ntBASIC14.28□□□□□ -0.12
MMP28Q9H239 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC14.28□□□□□ -0.12
MMP28Q9H239 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC14.28□□□□□ -0.12
MMP28Q9H239 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.28□□□□□ -0.12
MMP28Q9H239 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.28□□□□□ -0.12
MMP28Q9H239 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
MMP28Q9H239 AL353593.2-201ENST00000602529 1483 ntBASIC14.28□□□□□ -0.12
MMP28Q9H239 AL591684.3-201ENST00000605187 298 ntBASIC14.28□□□□□ -0.12
MMP28Q9H239 AL121772.3-201ENST00000610840 674 ntBASIC14.28□□□□□ -0.12
MMP28Q9H239 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.28□□□□□ -0.12
MMP28Q9H239 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.28□□□□□ -0.12
MMP28Q9H239 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.28□□□□□ -0.12
MMP28Q9H239 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
MMP28Q9H239 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.28□□□□□ -0.12
MMP28Q9H239 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
MMP28Q9H239 PCDHA3-202ENST00000532566 4594 ntBASIC14.28□□□□□ -0.12
MMP28Q9H239 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
MMP28Q9H239 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.28□□□□□ -0.12
MMP28Q9H239 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MMP28Q9H239 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
MMP28Q9H239 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.27□□□□□ -0.12
MMP28Q9H239 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MMP28Q9H239 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
MMP28Q9H239 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
MMP28Q9H239 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MMP28Q9H239 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.27□□□□□ -0.12
MMP28Q9H239 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MMP28Q9H239 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.27□□□□□ -0.12
MMP28Q9H239 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.12
MMP28Q9H239 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
MMP28Q9H239 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
MMP28Q9H239 FUT8-AS1-201ENST00000621019 1521 ntBASIC14.27□□□□□ -0.12
MMP28Q9H239 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
MMP28Q9H239 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.27□□□□□ -0.12
MMP28Q9H239 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
MMP28Q9H239 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
MMP28Q9H239 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
MMP28Q9H239 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
MMP28Q9H239 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC14.27□□□□□ -0.12
MMP28Q9H239 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 FUOM-202ENST00000368551 628 ntTSL 3 BASIC14.27□□□□□ -0.13
MMP28Q9H239 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
MMP28Q9H239 TSPY19P-201ENST00000418461 509 ntBASIC14.27□□□□□ -0.13
MMP28Q9H239 TSPY18P-201ENST00000441642 509 ntBASIC14.27□□□□□ -0.13
MMP28Q9H239 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.27□□□□□ -0.13
MMP28Q9H239 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC14.27□□□□□ -0.13
MMP28Q9H239 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC14.27□□□□□ -0.13
MMP28Q9H239 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC14.27□□□□□ -0.13
MMP28Q9H239 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.27□□□□□ -0.13
MMP28Q9H239 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.27□□□□□ -0.13
MMP28Q9H239 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.27□□□□□ -0.13
MMP28Q9H239 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC14.27□□□□□ -0.13
MMP28Q9H239 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.27□□□□□ -0.13
MMP28Q9H239 LINC01711-201ENST00000598340 967 ntBASIC14.27□□□□□ -0.13
MMP28Q9H239 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.27□□□□□ -0.13
MMP28Q9H239 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC14.27□□□□□ -0.13
MMP28Q9H239 AD001527.2-201ENST00000622994 785 ntBASIC14.27□□□□□ -0.13
MMP28Q9H239 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.27□□□□□ -0.13
MMP28Q9H239 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.27□□□□□ -0.13
MMP28Q9H239 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.27□□□□□ -0.13
MMP28Q9H239 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC14.27□□□□□ -0.13
MMP28Q9H239 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
MMP28Q9H239 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
MMP28Q9H239 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC14.27□□□□□ -0.13
MMP28Q9H239 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms