Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AC132872.4-202ENST00000622924 2756 ntBASIC17.32■□□□□ 0.36
KRT39Q6A163 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
KRT39Q6A163 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
KRT39Q6A163 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.32■□□□□ 0.36
KRT39Q6A163 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.32■□□□□ 0.36
KRT39Q6A163 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.32■□□□□ 0.36
KRT39Q6A163 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 RN7SL828P-201ENST00000607615 303 ntBASIC17.32■□□□□ 0.36
KRT39Q6A163 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.32■□□□□ 0.36
KRT39Q6A163 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
KRT39Q6A163 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
KRT39Q6A163 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.32■□□□□ 0.36
KRT39Q6A163 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.32■□□□□ 0.36
KRT39Q6A163 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.32■□□□□ 0.36
KRT39Q6A163 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
KRT39Q6A163 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.31■□□□□ 0.36
KRT39Q6A163 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 NFIC-211ENST00000641145 8399 ntBASIC17.31■□□□□ 0.36
KRT39Q6A163 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.31■□□□□ 0.36
KRT39Q6A163 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
KRT39Q6A163 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.31■□□□□ 0.36
KRT39Q6A163 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.31■□□□□ 0.36
KRT39Q6A163 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.31■□□□□ 0.36
KRT39Q6A163 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.31■□□□□ 0.36
KRT39Q6A163 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.31■□□□□ 0.36
KRT39Q6A163 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.31■□□□□ 0.36
KRT39Q6A163 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.31■□□□□ 0.36
KRT39Q6A163 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 AL133215.2-201ENST00000609242 977 ntBASIC17.31■□□□□ 0.36
KRT39Q6A163 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
KRT39Q6A163 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
KRT39Q6A163 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.31■□□□□ 0.36
KRT39Q6A163 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.31■□□□□ 0.36
KRT39Q6A163 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
KRT39Q6A163 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.3■□□□□ 0.36
KRT39Q6A163 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.3■□□□□ 0.36
KRT39Q6A163 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.3■□□□□ 0.36
KRT39Q6A163 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.3■□□□□ 0.36
KRT39Q6A163 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 SPDYE17-201ENST00000412399 783 ntBASIC17.3■□□□□ 0.36
KRT39Q6A163 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.3■□□□□ 0.36
KRT39Q6A163 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.3■□□□□ 0.36
KRT39Q6A163 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
KRT39Q6A163 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.3■□□□□ 0.36
KRT39Q6A163 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.3■□□□□ 0.36
KRT39Q6A163 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.3■□□□□ 0.36
KRT39Q6A163 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
KRT39Q6A163 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms