Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CU634019.7-201ENST00000624153 1185 ntBASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 FP236241.2-201ENST00000624906 1185 ntBASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 TOMM22P5-201ENST00000416399 439 ntBASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 SLED1-202ENST00000512051 380 ntBASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 BTNL10-201ENST00000595971 695 ntBASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM1Q2M3G4 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 AL442647.2-201ENST00000429864 857 ntBASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 VDAC1P7-201ENST00000462417 847 ntBASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 SLC25A47P1-201ENST00000531577 414 ntBASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 COX11-210ENST00000639671 696 ntBASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 KRT8P22-201ENST00000562317 1415 ntBASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.56■□□□□ 0.56
SHROOM1Q2M3G4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 AC093525.8-201ENST00000624099 1342 ntBASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 REXO1L6P-201ENST00000603433 1515 ntBASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM1Q2M3G4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms