Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HDAC4P56524 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC4P56524 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC4P56524 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HDAC4P56524 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC4P56524 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC4P56524 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC4P56524 AC018529.1-201ENST00000613063 361 ntBASIC16.8■□□□□ 0.28
HDAC4P56524 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC4P56524 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC4P56524 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC4P56524 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.79■□□□□ 0.28
HDAC4P56524 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
HDAC4P56524 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.79■□□□□ 0.28
HDAC4P56524 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.79■□□□□ 0.28
HDAC4P56524 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.79■□□□□ 0.28
HDAC4P56524 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 BANF1P1-201ENST00000553684 263 ntBASIC16.79■□□□□ 0.28
HDAC4P56524 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
HDAC4P56524 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.79■□□□□ 0.28
HDAC4P56524 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.79■□□□□ 0.28
HDAC4P56524 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.79■□□□□ 0.28
HDAC4P56524 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.79■□□□□ 0.28
HDAC4P56524 AC139530.3-201ENST00000620344 690 ntBASIC16.79■□□□□ 0.28
HDAC4P56524 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.79■□□□□ 0.28
HDAC4P56524 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
HDAC4P56524 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 PAUPAR-201ENST00000630360 2965 ntBASIC16.79■□□□□ 0.28
HDAC4P56524 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
HDAC4P56524 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC4P56524 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
HDAC4P56524 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC4P56524 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC4P56524 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 AC011477.6-201ENST00000604980 1927 ntBASIC16.78■□□□□ 0.28
HDAC4P56524 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HDAC4P56524 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HDAC4P56524 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HDAC4P56524 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
HDAC4P56524 AL139400.1-201ENST00000366220 510 ntBASIC16.78■□□□□ 0.28
HDAC4P56524 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.78■□□□□ 0.28
HDAC4P56524 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.78■□□□□ 0.28
HDAC4P56524 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HDAC4P56524 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.78■□□□□ 0.28
HDAC4P56524 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.78■□□□□ 0.28
HDAC4P56524 AP001059.3-201ENST00000619053 235 ntBASIC16.78■□□□□ 0.28
HDAC4P56524 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.78■□□□□ 0.28
HDAC4P56524 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms