Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AL590787.1-201ENST00000568856 1315 ntBASIC16.21■□□□□ 0.19
PTPN4P29074 ELL2P1-201ENST00000413990 1906 ntBASIC16.21■□□□□ 0.19
PTPN4P29074 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PTPN4P29074 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PTPN4P29074 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.21■□□□□ 0.19
PTPN4P29074 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.21■□□□□ 0.19
PTPN4P29074 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PTPN4P29074 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.21■□□□□ 0.19
PTPN4P29074 RHOQP3-201ENST00000437982 621 ntBASIC16.21■□□□□ 0.19
PTPN4P29074 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.21■□□□□ 0.19
PTPN4P29074 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.21■□□□□ 0.19
PTPN4P29074 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.21■□□□□ 0.19
PTPN4P29074 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.21■□□□□ 0.19
PTPN4P29074 AC007064.4-201ENST00000637740 555 ntBASIC16.21■□□□□ 0.19
PTPN4P29074 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN4P29074 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.21■□□□□ 0.19
PTPN4P29074 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.18
PTPN4P29074 AC068587.6-202ENST00000641839 5619 ntBASIC16.21■□□□□ 0.18
PTPN4P29074 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
PTPN4P29074 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.21■□□□□ 0.18
PTPN4P29074 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PTPN4P29074 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.21■□□□□ 0.18
PTPN4P29074 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PTPN4P29074 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PTPN4P29074 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PTPN4P29074 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.2■□□□□ 0.18
PTPN4P29074 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.2■□□□□ 0.18
PTPN4P29074 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.2■□□□□ 0.18
PTPN4P29074 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.2■□□□□ 0.18
PTPN4P29074 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.2■□□□□ 0.18
PTPN4P29074 CEND1P1-201ENST00000451006 455 ntBASIC16.2■□□□□ 0.18
PTPN4P29074 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.2■□□□□ 0.18
PTPN4P29074 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
PTPN4P29074 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.2■□□□□ 0.18
PTPN4P29074 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.2■□□□□ 0.18
PTPN4P29074 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PTPN4P29074 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PTPN4P29074 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.2■□□□□ 0.18
PTPN4P29074 AC023141.13-201ENST00000604991 943 ntBASIC16.2■□□□□ 0.18
PTPN4P29074 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.2■□□□□ 0.18
PTPN4P29074 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PTPN4P29074 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 AC023908.3-201ENST00000564211 3047 ntBASIC16.2■□□□□ 0.18
PTPN4P29074 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PTPN4P29074 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN4P29074 AC025580.3-201ENST00000617932 1424 ntBASIC16.19■□□□□ 0.18
PTPN4P29074 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 AC069224.1-201ENST00000566372 1715 ntBASIC16.19■□□□□ 0.18
PTPN4P29074 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.19■□□□□ 0.18
PTPN4P29074 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.19■□□□□ 0.18
PTPN4P29074 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
PTPN4P29074 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PTPN4P29074 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.19■□□□□ 0.18
PTPN4P29074 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.19■□□□□ 0.18
PTPN4P29074 CNN2P11-201ENST00000429351 262 ntBASIC16.19■□□□□ 0.18
PTPN4P29074 HMGN1P19-201ENST00000436976 333 ntBASIC16.19■□□□□ 0.18
PTPN4P29074 METTL21AP1-201ENST00000438852 635 ntBASIC16.19■□□□□ 0.18
PTPN4P29074 AC074386.1-202ENST00000463561 864 ntBASIC16.19■□□□□ 0.18
PTPN4P29074 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.19■□□□□ 0.18
PTPN4P29074 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.19■□□□□ 0.18
PTPN4P29074 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.19■□□□□ 0.18
PTPN4P29074 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
PTPN4P29074 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PTPN4P29074 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN4P29074 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms