Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.712e-9■□□□□ 10.7
YBX3P16989 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.57■□□□□ 0.562e-9■□□□□ 10.7
YBX3P16989 SF3B3-215ENST00000577085 529 ntTSL 420.56■□□□□ 0.888e-10■□□□□ 10.7
YBX3P16989 SF3B3-207ENST00000566095 453 ntTSL 311.63□□□□□ -0.558e-10■□□□□ 10.7
YBX3P16989 EXOSC1-209ENST00000477692 480 ntTSL 516.63■□□□□ 0.254e-8■□□□□ 10.7
YBX3P16989 EXOSC1-210ENST00000485122 564 ntTSL 5 BASIC15.74■□□□□ 0.114e-8■□□□□ 10.7
YBX3P16989 EXOSC1-201ENST00000370884 536 ntTSL 515.54■□□□□ 0.084e-8■□□□□ 10.7
YBX3P16989 EXOSC1-204ENST00000370902 923 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.084e-8■□□□□ 10.7
YBX3P16989 EXOSC1-202ENST00000370885 718 ntTSL 3 BASIC14.82□□□□□ -0.044e-8■□□□□ 10.7
YBX3P16989 EXOSC1-203ENST00000370886 741 ntTSL 5 BASIC14.38□□□□□ -0.114e-8■□□□□ 10.7
YBX3P16989 EXOSC1-205ENST00000471049 642 ntTSL 512.75□□□□□ -0.374e-8■□□□□ 10.7
YBX3P16989 BUD23-215ENST00000471215 3886 ntTSL 210.15□□□□□ -0.784e-8■□□□□ 10.7
YBX3P16989 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.294e-7■□□□□ 10.7
YBX3P16989 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.244e-7■□□□□ 10.7
YBX3P16989 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.49■□□□□ 0.714e-7■□□□□ 10.7
YBX3P16989 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.658e-7■□□□□ 10.7
YBX3P16989 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.298e-7■□□□□ 10.7
YBX3P16989 TPR-205ENST00000474852 2757 ntTSL 1 (best)16.45■□□□□ 0.224e-7■□□□□ 10.7
YBX3P16989 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.133e-9■□□□□ 10.7
YBX3P16989 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.165e-11■□□□□ 10.7
YBX3P16989 RBBP7-211ENST00000486166 1535 ntTSL 1 (best)12.52□□□□□ -0.412e-9■□□□□ 10.7
YBX3P16989 RBBP7-205ENST00000416035 857 ntTSL 311.25□□□□□ -0.612e-9■□□□□ 10.7
YBX3P16989 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.82e-7■□□□□ 10.7
YBX3P16989 CTSZ-204ENST00000503833 955 ntTSL 1 (best)29.59■■■□□ 2.332e-7■□□□□ 10.7
YBX3P16989 DIP2B-204ENST00000549620 2676 ntTSL 1 (best)20.29■□□□□ 0.844e-7■□□□□ 10.7
YBX3P16989 DIP2B-202ENST00000546719 2297 ntTSL 1 (best)8.65□□□□□ -1.034e-7■□□□□ 10.7
YBX3P16989 UCK2-207ENST00000475333 416 ntTSL 58.95□□□□□ -0.983e-10■□□□□ 10.7
YBX3P16989 UCK2-208ENST00000479872 4669 ntTSL 28.84□□□□□ -0.993e-10■□□□□ 10.7
YBX3P16989 UCK2-203ENST00000463772 599 ntTSL 57.69□□□□□ -1.183e-10■□□□□ 10.7
YBX3P16989 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.326e-8■□□□□ 10.7
YBX3P16989 PLIN2-207ENST00000475923 1000 ntTSL 311.23□□□□□ -0.616e-8■□□□□ 10.7
YBX3P16989 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC10.11□□□□□ -0.796e-8■□□□□ 10.7
YBX3P16989 PLIN2-204ENST00000434144 623 ntTSL 37.52□□□□□ -1.216e-8■□□□□ 10.7
YBX3P16989 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.08□□□□□ -1.446e-8■□□□□ 10.7
YBX3P16989 PLIN2-206ENST00000472715 801 ntTSL 24.7□□□□□ -1.666e-8■□□□□ 10.7
YBX3P16989 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.432e-8■□□□□ 10.7
YBX3P16989 EML2-215ENST00000588308 2062 ntTSL 222.75■■□□□ 1.232e-8■□□□□ 10.7
YBX3P16989 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.132e-8■□□□□ 10.7
YBX3P16989 EML2-205ENST00000586195 1952 ntTSL 222.06■■□□□ 1.122e-8■□□□□ 10.7
YBX3P16989 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.952e-8■□□□□ 10.7
YBX3P16989 EML2-206ENST00000586405 630 ntTSL 320.27■□□□□ 0.842e-8■□□□□ 10.7
YBX3P16989 EML2-227ENST00000592433 705 ntTSL 219.58■□□□□ 0.722e-8■□□□□ 10.7
YBX3P16989 EML2-210ENST00000587484 219 ntTSL 318.02■□□□□ 0.482e-8■□□□□ 10.7
YBX3P16989 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.392e-8■□□□□ 10.7
YBX3P16989 MAN2B1-216ENST00000598876 551 ntTSL 424.32■■□□□ 1.482e-8■□□□□ 10.7
YBX3P16989 MAN2B1-214ENST00000596512 556 ntTSL 423.8■■□□□ 1.42e-8■□□□□ 10.7
YBX3P16989 MAN2B1-217ENST00000600281 583 ntTSL 222.31■■□□□ 1.162e-8■□□□□ 10.7
YBX3P16989 MAN2B1-209ENST00000486847 535 ntTSL 422.31■■□□□ 1.162e-8■□□□□ 10.7
YBX3P16989 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.418e-7■□□□□ 10.7
YBX3P16989 WDR12-206ENST00000477723 706 ntTSL 320.28■□□□□ 0.842e-7■□□□□ 10.7
YBX3P16989 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.372e-7■□□□□ 10.7
YBX3P16989 DNAAF5-206ENST00000461576 298 ntTSL 29.72□□□□□ -0.852e-6■□□□□ 10.7
YBX3P16989 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.76■■□□□ 1.075e-13■□□□□ 10.7
YBX3P16989 SNHG5-203ENST00000420199 1002 ntTSL 321.17■□□□□ 0.985e-13■□□□□ 10.7
YBX3P16989 SNHG5-215ENST00000623163 851 ntTSL 520.07■□□□□ 0.85e-13■□□□□ 10.7
YBX3P16989 SNHG5-209ENST00000435947 696 ntTSL 218.59■□□□□ 0.575e-13■□□□□ 10.7
YBX3P16989 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC16.97■□□□□ 0.315e-13■□□□□ 10.7
YBX3P16989 SNHG5-206ENST00000428833 641 ntTSL 216.55■□□□□ 0.245e-13■□□□□ 10.7
YBX3P16989 SNHG5-210ENST00000453754 401 ntTSL 316.53■□□□□ 0.245e-13■□□□□ 10.7
YBX3P16989 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC16.1■□□□□ 0.175e-13■□□□□ 10.7
YBX3P16989 SNHG5-212ENST00000589187 568 ntTSL 4 BASIC14.05□□□□□ -0.165e-13■□□□□ 10.7
YBX3P16989 SNHG5-202ENST00000414002 430 ntTSL 213.27□□□□□ -0.295e-13■□□□□ 10.7
YBX3P16989 SNHG5-220ENST00000624128 672 ntTSL 210.78□□□□□ -0.685e-13■□□□□ 10.7
YBX3P16989 SNHG5-218ENST00000623901 711 ntTSL 5 BASIC10.15□□□□□ -0.785e-13■□□□□ 10.7
YBX3P16989 SNHG5-217ENST00000623650 886 ntTSL 59.67□□□□□ -0.865e-13■□□□□ 10.7
YBX3P16989 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC7.8□□□□□ -1.165e-13■□□□□ 10.7
YBX3P16989 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC7.03□□□□□ -1.285e-13■□□□□ 10.7
YBX3P16989 SNHG5-216ENST00000623267 374 ntTSL 56.17□□□□□ -1.425e-13■□□□□ 10.7
YBX3P16989 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.17□□□□□ -1.425e-13■□□□□ 10.7
YBX3P16989 SNHG5-205ENST00000427501 680 ntTSL 25.62□□□□□ -1.515e-13■□□□□ 10.7
YBX3P16989 ALDH1A2-220ENST00000560122 562 ntTSL 511.49□□□□□ -0.573e-9■□□□□ 10.7
YBX3P16989 GPI-210ENST00000589504 536 ntTSL 223.13■■□□□ 1.293e-31■□□□□ 10.7
YBX3P16989 XRCC5-209ENST00000485763 616 ntTSL 28.9□□□□□ -0.984e-8■□□□□ 10.7
YBX3P16989 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC24.54■■□□□ 1.528e-7■□□□□ 10.7
YBX3P16989 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC24.03■■□□□ 1.448e-7■□□□□ 10.7
YBX3P16989 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.228e-7■□□□□ 10.7
YBX3P16989 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.848e-7■□□□□ 10.7
YBX3P16989 KXD1-214ENST00000600654 895 ntTSL 515.76■□□□□ 0.118e-7■□□□□ 10.7
YBX3P16989 KXD1-217ENST00000602094 2738 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.358e-7■□□□□ 10.7
YBX3P16989 KXD1-216ENST00000601630 1327 ntTSL 3 BASIC12.58□□□□□ -0.48e-7■□□□□ 10.7
YBX3P16989 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.139e-7■□□□□ 10.7
YBX3P16989 CDC42SE2-208ENST00000505065 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.759e-7■□□□□ 10.7
YBX3P16989 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.989e-7■□□□□ 10.7
YBX3P16989 CDC42SE2-203ENST00000502582 277 ntTSL 35.79□□□□□ -1.489e-7■□□□□ 10.7
YBX3P16989 CDC42SE2-210ENST00000506929 410 ntTSL 35.48□□□□□ -1.539e-7■□□□□ 10.7
YBX3P16989 HEXA-202ENST00000563762 1174 ntTSL 220.27■□□□□ 0.841e-6■□□□□ 10.7
YBX3P16989 HEXA-207ENST00000566672 1397 ntTSL 217.23■□□□□ 0.351e-6■□□□□ 10.7
YBX3P16989 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC16.64■□□□□ 0.251e-6■□□□□ 10.7
YBX3P16989 HEXA-208ENST00000567027 1353 ntTSL 216.62■□□□□ 0.251e-6■□□□□ 10.7
YBX3P16989 HEXA-209ENST00000567159 1582 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.071e-6■□□□□ 10.7
YBX3P16989 HEXA-211ENST00000567411 1743 ntTSL 515.05■□□□□ -01e-6■□□□□ 10.7
YBX3P16989 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.141e-6■□□□□ 10.7
YBX3P16989 HEXA-215ENST00000569410 1351 ntTSL 513.22□□□□□ -0.291e-6■□□□□ 10.7
YBX3P16989 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.341e-6■□□□□ 10.7
YBX3P16989 CSTB-202ENST00000480147 2344 nt22.56■■□□□ 1.22e-9■□□□□ 10.7
YBX3P16989 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.282e-9■□□□□ 10.7
YBX3P16989 MBTPS1-216ENST00000570064 3086 ntTSL 212.83□□□□□ -0.363e-7■□□□□ 10.7
YBX3P16989 MLH1-208ENST00000442249 558 ntTSL 418.88■□□□□ 0.617e-11■□□□□ 10.7
YBX3P16989 MLH1-214ENST00000457004 668 ntTSL 318.88■□□□□ 0.617e-11■□□□□ 10.7
YBX3P16989 MLH1-211ENST00000454028 570 ntTSL 515.9■□□□□ 0.147e-11■□□□□ 10.7
Retrieved 100 of 29,075 protein–RNA pairs in 283.7 ms