Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 KLF4P1-201ENST00000412782 1185 ntBASIC12.16□□□□□ -0.46
HLA-DQA1P01909 SPDYE15P-201ENST00000424157 909 ntBASIC12.16□□□□□ -0.46
HLA-DQA1P01909 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 LINC01238-205ENST00000567549 1107 ntBASIC12.16□□□□□ -0.46
HLA-DQA1P01909 NAA38-203ENST00000575071 553 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 AL136038.4-201ENST00000603606 1261 ntBASIC12.16□□□□□ -0.46
HLA-DQA1P01909 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 STK40-201ENST00000359297 4837 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 AL353692.3-201ENST00000407031 1396 ntBASIC12.16□□□□□ -0.46
HLA-DQA1P01909 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 OS9-207ENST00000439210 1946 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 ACTG1P4-201ENST00000425123 1122 ntBASIC12.15□□□□□ -0.46
HLA-DQA1P01909 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 HOMER2P1-201ENST00000455653 964 ntBASIC12.15□□□□□ -0.46
HLA-DQA1P01909 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 AC006011.2-201ENST00000621313 1158 ntBASIC12.15□□□□□ -0.46
HLA-DQA1P01909 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DQA1P01909 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
HLA-DQA1P01909 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC12.15□□□□□ -0.47
HLA-DQA1P01909 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
HLA-DQA1P01909 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 HNRNPRP1-201ENST00000453465 1695 ntBASIC12.14□□□□□ -0.47
HLA-DQA1P01909 AC090616.6-203ENST00000579186 1945 ntBASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms