Protein–RNA interactions for Protein: O43541

SMAD6, Mothers against decapentaplegic homolog 6, humanhuman

Known RBP Predictions only

Length 496 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6O43541 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.16■□□□□ 0.18
SMAD6O43541 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.16■□□□□ 0.18
SMAD6O43541 PIN1P1-201ENST00000412108 996 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
SMAD6O43541 TARDBPP1-201ENST00000442013 1203 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 DOC2GP-202ENST00000514950 1163 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.16■□□□□ 0.18
SMAD6O43541 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.16■□□□□ 0.18
SMAD6O43541 AC190387.1-201ENST00000551683 408 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.16■□□□□ 0.18
SMAD6O43541 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 AL450472.2-201ENST00000603663 1156 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 AC074044.1-201ENST00000609673 707 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.16■□□□□ 0.18
SMAD6O43541 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
SMAD6O43541 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SMAD6O43541 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 LINC02447-202ENST00000501888 2146 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMAD6O43541 AC007541.1-201ENST00000570282 1469 ntBASIC16.16■□□□□ 0.18
SMAD6O43541 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SMAD6O43541 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SMAD6O43541 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.15■□□□□ 0.18
SMAD6O43541 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
SMAD6O43541 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.15■□□□□ 0.18
SMAD6O43541 AL603832.2-201ENST00000566195 2125 ntBASIC16.15■□□□□ 0.18
SMAD6O43541 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SMAD6O43541 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.15■□□□□ 0.18
SMAD6O43541 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SMAD6O43541 AC015922.1-201ENST00000421102 1152 ntBASIC16.15■□□□□ 0.18
SMAD6O43541 CRB3P1-201ENST00000449338 276 ntBASIC16.15■□□□□ 0.18
SMAD6O43541 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SMAD6O43541 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.15■□□□□ 0.18
SMAD6O43541 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.15■□□□□ 0.18
SMAD6O43541 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.15■□□□□ 0.18
SMAD6O43541 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.15■□□□□ 0.18
SMAD6O43541 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.15■□□□□ 0.18
SMAD6O43541 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.15■□□□□ 0.18
SMAD6O43541 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.15■□□□□ 0.18
SMAD6O43541 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.15■□□□□ 0.18
SMAD6O43541 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
SMAD6O43541 AL132655.2-201ENST00000596276 594 ntBASIC16.15■□□□□ 0.18
SMAD6O43541 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.15■□□□□ 0.18
SMAD6O43541 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SMAD6O43541 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.15■□□□□ 0.18
SMAD6O43541 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 AP003680.1-201ENST00000598970 3660 ntBASIC16.15■□□□□ 0.18
SMAD6O43541 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMAD6O43541 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SMAD6O43541 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SMAD6O43541 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.15■□□□□ 0.18
SMAD6O43541 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
SMAD6O43541 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
SMAD6O43541 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.14■□□□□ 0.17
SMAD6O43541 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SMAD6O43541 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SMAD6O43541 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.14■□□□□ 0.17
SMAD6O43541 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMAD6O43541 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SMAD6O43541 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SMAD6O43541 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMAD6O43541 AC011477.6-201ENST00000604980 1927 ntBASIC16.14■□□□□ 0.17
SMAD6O43541 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMAD6O43541 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMAD6O43541 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.14■□□□□ 0.17
SMAD6O43541 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SMAD6O43541 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMAD6O43541 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.14■□□□□ 0.17
SMAD6O43541 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SMAD6O43541 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms