Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 FO393414.2-201ENST00000405153 598 ntBASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 AL355864.2-201ENST00000447420 863 ntBASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 AC008687.7-202ENST00000637404 953 ntBASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
SHROOM4Q9ULL8 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.42
SHROOM4Q9ULL8 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
SHROOM4Q9ULL8 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
SHROOM4Q9ULL8 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC30.2■■■□□ 2.42
SHROOM4Q9ULL8 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.42
SHROOM4Q9ULL8 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
SHROOM4Q9ULL8 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
SHROOM4Q9ULL8 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 AL691432.1-201ENST00000596308 1422 ntBASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 KC6-205ENST00000599934 556 ntTSL 4 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 POU5F1P6-201ENST00000466990 990 ntBASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 AC133539.2-201ENST00000604757 467 ntBASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC30.19■■■□□ 2.42
SHROOM4Q9ULL8 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 FTH1P14-201ENST00000482930 551 ntBASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC30.18■■■□□ 2.42
SHROOM4Q9ULL8 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 BNIP3P1-202ENST00000550043 1585 ntBASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 INTS4P2-202ENST00000614726 2019 ntBASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 HNRNPA1P13-201ENST00000510646 963 ntBASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 TIMM17BP1-201ENST00000545713 516 ntBASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 ME2P1-201ENST00000426028 1970 ntBASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
SHROOM4Q9ULL8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC30.16■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms