Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 AC092978.1-202ENST00000637590 1327 ntBASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 HSPB1P2-201ENST00000448722 546 ntBASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 KRT18P25-201ENST00000508931 1278 ntBASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 AC097359.3-201ENST00000603982 1210 ntBASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 KRT8P35-201ENST00000483942 1338 ntBASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 AC141586.5-201ENST00000624546 2050 ntBASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 FTLP10-202ENST00000505798 471 ntBASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 AC132938.4-201ENST00000623835 848 ntBASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF541Q9H0D2 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 AC134407.2-201ENST00000625089 1978 ntBASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 MPV17-205ENST00000402310 906 ntTSL 5 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 AC016700.1-201ENST00000429424 312 ntBASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 AL450472.2-201ENST00000603663 1156 ntBASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF541Q9H0D2 REXO1L1P-202ENST00000608646 1974 ntBASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms