Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 IGLL3P-201ENST00000412472 434 ntBASIC12.1□□□□□ -0.47
LINC00477Q96M19 AC140658.5-201ENST00000438532 169 ntBASIC12.1□□□□□ -0.47
LINC00477Q96M19 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 MIR4321-201ENST00000592276 80 ntBASIC12.1□□□□□ -0.47
LINC00477Q96M19 AL161645.1-201ENST00000622716 1255 ntBASIC12.1□□□□□ -0.47
LINC00477Q96M19 AC116407.3-201ENST00000623905 1129 ntBASIC12.1□□□□□ -0.47
LINC00477Q96M19 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 AL589702.1-201ENST00000641229 1509 ntBASIC12.1□□□□□ -0.47
LINC00477Q96M19 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
LINC00477Q96M19 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00477Q96M19 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 AC079776.4-201ENST00000511039 504 ntBASIC12.09□□□□□ -0.47
LINC00477Q96M19 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 RN7SL510P-201ENST00000581311 263 ntBASIC12.09□□□□□ -0.47
LINC00477Q96M19 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00477Q96M19 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00477Q96M19 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms