Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 BNIP3P1-202ENST00000550043 1585 ntBASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS3Q8IXF0 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 TDH-203ENST00000531764 1110 ntBASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
NPAS3Q8IXF0 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS3Q8IXF0 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms