Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 MIR3180-5-201ENST00000583743 153 ntBASIC9.98□□□□□ -0.81
LINC00643Q86TS7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 AL121829.2-201ENST00000620908 328 ntBASIC9.98□□□□□ -0.81
LINC00643Q86TS7 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 AL021920.2-201ENST00000624828 1351 ntBASIC9.98□□□□□ -0.81
LINC00643Q86TS7 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LINC00643Q86TS7 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 AC130686.1-201ENST00000622936 2466 ntBASIC9.97□□□□□ -0.81
LINC00643Q86TS7 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 EML1-203ENST00000334192 4064 ntTSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 FTO-214ENST00000636218 2227 ntTSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 CREM-229ENST00000474362 1030 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms