Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.41■□□□□ 0.22
COL9A1P20849 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL9A1P20849 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL9A1P20849 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL9A1P20849 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL9A1P20849 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL9A1P20849 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL9A1P20849 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL9A1P20849 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.41■□□□□ 0.22
COL9A1P20849 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL9A1P20849 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.4■□□□□ 0.22
COL9A1P20849 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.4■□□□□ 0.22
COL9A1P20849 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL9A1P20849 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL9A1P20849 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL9A1P20849 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL9A1P20849 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.4■□□□□ 0.22
COL9A1P20849 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL9A1P20849 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
COL9A1P20849 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL9A1P20849 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 SPDYE17-201ENST00000412399 783 ntBASIC16.4■□□□□ 0.22
COL9A1P20849 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 AL442647.2-201ENST00000429864 857 ntBASIC16.4■□□□□ 0.22
COL9A1P20849 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL9A1P20849 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.4■□□□□ 0.22
COL9A1P20849 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.4■□□□□ 0.22
COL9A1P20849 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC16.4■□□□□ 0.22
COL9A1P20849 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.4■□□□□ 0.22
COL9A1P20849 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.4■□□□□ 0.22
COL9A1P20849 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 AC073352.2-201ENST00000609385 439 ntBASIC16.4■□□□□ 0.22
COL9A1P20849 AP001065.2-201ENST00000617205 644 ntBASIC16.4■□□□□ 0.22
COL9A1P20849 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.4■□□□□ 0.22
COL9A1P20849 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.4■□□□□ 0.22
COL9A1P20849 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL9A1P20849 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 HCG11-201ENST00000411553 5696 ntBASIC16.39■□□□□ 0.21
COL9A1P20849 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL9A1P20849 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.39■□□□□ 0.21
COL9A1P20849 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL9A1P20849 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC16.39■□□□□ 0.21
COL9A1P20849 AC098935.1-201ENST00000446057 611 ntBASIC16.39■□□□□ 0.21
COL9A1P20849 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.39■□□□□ 0.21
COL9A1P20849 COX5BP1-201ENST00000507622 393 ntBASIC16.39■□□□□ 0.21
COL9A1P20849 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.39■□□□□ 0.21
COL9A1P20849 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC16.39■□□□□ 0.21
COL9A1P20849 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.39■□□□□ 0.21
COL9A1P20849 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.39■□□□□ 0.21
COL9A1P20849 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.39■□□□□ 0.21
COL9A1P20849 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL9A1P20849 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
COL9A1P20849 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.39■□□□□ 0.21
COL9A1P20849 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL9A1P20849 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.39■□□□□ 0.21
COL9A1P20849 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL9A1P20849 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL9A1P20849 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL9A1P20849 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
COL9A1P20849 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL9A1P20849 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL9A1P20849 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL9A1P20849 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms