Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 AL596087.1-201ENST00000400979 1969 ntBASIC18.47■□□□□ 0.55
COL2A1P02458 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.47■□□□□ 0.55
COL2A1P02458 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.47■□□□□ 0.55
COL2A1P02458 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL2A1P02458 AL133338.1-201ENST00000565695 1517 ntBASIC18.47■□□□□ 0.55
COL2A1P02458 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.46■□□□□ 0.55
COL2A1P02458 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
COL2A1P02458 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.46■□□□□ 0.55
COL2A1P02458 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.46■□□□□ 0.55
COL2A1P02458 CNN2P8-201ENST00000421872 913 ntBASIC18.46■□□□□ 0.55
COL2A1P02458 AC016694.1-201ENST00000434179 700 ntBASIC18.46■□□□□ 0.55
COL2A1P02458 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.46■□□□□ 0.55
COL2A1P02458 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 AC007551.1-201ENST00000457394 519 ntBASIC18.46■□□□□ 0.55
COL2A1P02458 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC18.46■□□□□ 0.55
COL2A1P02458 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.46■□□□□ 0.55
COL2A1P02458 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC18.46■□□□□ 0.55
COL2A1P02458 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.46■□□□□ 0.55
COL2A1P02458 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.46■□□□□ 0.55
COL2A1P02458 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
COL2A1P02458 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL2A1P02458 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.46■□□□□ 0.55
COL2A1P02458 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.54
COL2A1P02458 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.54
COL2A1P02458 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.46■□□□□ 0.54
COL2A1P02458 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL2A1P02458 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC18.46■□□□□ 0.54
COL2A1P02458 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.46■□□□□ 0.54
COL2A1P02458 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.54
COL2A1P02458 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
COL2A1P02458 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.46■□□□□ 0.54
COL2A1P02458 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC18.46■□□□□ 0.54
COL2A1P02458 DUX4L45-201ENST00000566406 1057 ntBASIC18.46■□□□□ 0.54
COL2A1P02458 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC18.46■□□□□ 0.54
COL2A1P02458 AC025279.2-201ENST00000569730 653 ntBASIC18.46■□□□□ 0.54
COL2A1P02458 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC18.46■□□□□ 0.54
COL2A1P02458 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL2A1P02458 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL2A1P02458 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.45■□□□□ 0.54
COL2A1P02458 PCDHA12-202ENST00000613593 2588 ntBASIC18.45■□□□□ 0.54
COL2A1P02458 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL2A1P02458 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
COL2A1P02458 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC18.45■□□□□ 0.54
COL2A1P02458 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL2A1P02458 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
COL2A1P02458 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 APOC3-202ENST00000375345 604 ntTSL 5 BASIC18.45■□□□□ 0.54
COL2A1P02458 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 FAM21FP-201ENST00000426241 1131 ntBASIC18.45■□□□□ 0.54
COL2A1P02458 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC18.45■□□□□ 0.54
COL2A1P02458 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL2A1P02458 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.45■□□□□ 0.54
COL2A1P02458 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC18.45■□□□□ 0.54
COL2A1P02458 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC18.45■□□□□ 0.54
COL2A1P02458 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC18.45■□□□□ 0.54
COL2A1P02458 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC18.45■□□□□ 0.54
COL2A1P02458 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL2A1P02458 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC18.45■□□□□ 0.54
COL2A1P02458 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.45■□□□□ 0.54
COL2A1P02458 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
COL2A1P02458 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.44■□□□□ 0.54
COL2A1P02458 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL2A1P02458 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms