Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CTSL-202ENST00000342020 933 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 TUBB8P8-201ENST00000458717 1058 ntBASIC12.22□□□□□ -0.45
COL6A5A8TX70 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 SLC25A24-204ENST00000569674 2357 ntBASIC12.22□□□□□ -0.45
COL6A5A8TX70 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 AC074338.1-201ENST00000416825 156 ntBASIC12.22□□□□□ -0.45
COL6A5A8TX70 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 PFN2-206ENST00000461930 606 ntTSL 4 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 AC026410.1-201ENST00000507366 1101 ntBASIC12.22□□□□□ -0.45
COL6A5A8TX70 NCK2-206ENST00000522586 490 ntTSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 FOS-204ENST00000554617 796 ntTSL 2 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 BNIP3P13-201ENST00000599968 566 ntBASIC12.22□□□□□ -0.45
COL6A5A8TX70 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL6A5A8TX70 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC12.22□□□□□ -0.45
COL6A5A8TX70 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC12.21□□□□□ -0.45
COL6A5A8TX70 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.21□□□□□ -0.45
COL6A5A8TX70 ALG1L6P-201ENST00000515248 758 ntBASIC12.21□□□□□ -0.45
COL6A5A8TX70 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC12.21□□□□□ -0.45
COL6A5A8TX70 AL031713.1-201ENST00000564813 661 ntBASIC12.21□□□□□ -0.45
COL6A5A8TX70 IRF3-215ENST00000596822 823 ntTSL 3 BASIC12.21□□□□□ -0.45
COL6A5A8TX70 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC12.21□□□□□ -0.45
COL6A5A8TX70 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
COL6A5A8TX70 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
COL6A5A8TX70 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL6A5A8TX70 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
COL6A5A8TX70 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
COL6A5A8TX70 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC12.21□□□□□ -0.46
COL6A5A8TX70 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC12.21□□□□□ -0.46
COL6A5A8TX70 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL6A5A8TX70 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
COL6A5A8TX70 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL6A5A8TX70 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
COL6A5A8TX70 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC12.21□□□□□ -0.46
COL6A5A8TX70 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC12.21□□□□□ -0.46
COL6A5A8TX70 ZACNP1-201ENST00000612259 710 ntBASIC12.21□□□□□ -0.46
COL6A5A8TX70 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC12.21□□□□□ -0.46
COL6A5A8TX70 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
COL6A5A8TX70 AC051619.9-201ENST00000623237 597 ntBASIC12.21□□□□□ -0.46
COL6A5A8TX70 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL6A5A8TX70 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL6A5A8TX70 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 RTN3P1-201ENST00000536295 711 ntBASIC12.2□□□□□ -0.46
COL6A5A8TX70 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.2□□□□□ -0.46
COL6A5A8TX70 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 AC068587.8-201ENST00000641239 219 ntBASIC12.2□□□□□ -0.46
COL6A5A8TX70 AC116353.5-201ENST00000638148 1699 ntBASIC12.2□□□□□ -0.46
COL6A5A8TX70 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL6A5A8TX70 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms