Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL25A1Q9BXS0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC15.9■□□□□ 0.14
COL25A1Q9BXS0 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL25A1Q9BXS0 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.9■□□□□ 0.14
COL25A1Q9BXS0 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC15.9■□□□□ 0.14
COL25A1Q9BXS0 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL25A1Q9BXS0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 RPL14-203ENST00000416518 812 ntTSL 3 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 AQP7P5-201ENST00000428759 1049 ntBASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 AQP7P4-201ENST00000447083 1042 ntBASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 AQP7P2-201ENST00000453967 1041 ntBASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 RN7SL258P-201ENST00000478664 300 ntBASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 DUT-207ENST00000559416 635 ntTSL 2 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 AQP7P3-201ENST00000624547 1041 ntBASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 SNX33P1-201ENST00000592116 1762 ntBASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL25A1Q9BXS0 LINC00304-203ENST00000565008 1864 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A7P-201ENST00000382628 1395 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A23P-201ENST00000400136 1395 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A21P-201ENST00000510875 1396 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A15P-201ENST00000514465 1395 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A6P-201ENST00000515148 1394 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A16P-201ENST00000526662 1395 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A9P-201ENST00000527940 1395 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A5P-201ENST00000528738 1395 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A14P-201ENST00000530386 1395 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM90A13P-201ENST00000534703 1395 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 LINC00634-202ENST00000505157 222 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 THY1-209ENST00000580275 578 ntTSL 3 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 MIR4522-201ENST00000584932 87 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 AP005212.2-201ENST00000584979 510 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 MIR4321-201ENST00000592276 80 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 AC013467.2-201ENST00000605472 835 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 HMGB1P24-201ENST00000611897 328 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 AC087392.5-201ENST00000612517 489 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 AL121723.1-201ENST00000445194 1519 ntBASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.88■□□□□ 0.13
COL25A1Q9BXS0 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.87■□□□□ 0.13
COL25A1Q9BXS0 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.87■□□□□ 0.13
COL25A1Q9BXS0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL25A1Q9BXS0 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL25A1Q9BXS0 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL25A1Q9BXS0 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
COL25A1Q9BXS0 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms