Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 FLJ38576-201ENST00000623820 2459 ntBASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 Z97205.2-201ENST00000564697 1639 ntBASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.23■□□□□ 0.51
SYNGAP1Q96PV0 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 AC092171.3-201ENST00000610122 2651 ntBASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 TMEM14DP-201ENST00000422205 345 ntBASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 AL512343.1-201ENST00000605837 169 ntBASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 MIR8072-201ENST00000614241 80 ntBASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.22■□□□□ 0.51
SYNGAP1Q96PV0 PCDHB19P-201ENST00000570871 2371 ntBASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 AC015936.2-201ENST00000593177 259 ntBASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SYNGAP1Q96PV0 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
SYNGAP1Q96PV0 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
SYNGAP1Q96PV0 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
SYNGAP1Q96PV0 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SYNGAP1Q96PV0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms