Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 AC080080.1-201ENST00000625121 2420 ntBASIC15.63■□□□□ 0.09
LMX1AQ8TE12 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 Z97205.2-201ENST00000564697 1639 ntBASIC15.62■□□□□ 0.09
LMX1AQ8TE12 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 WFDC1-204ENST00000613603 549 ntBASIC15.62■□□□□ 0.09
LMX1AQ8TE12 MIR8072-201ENST00000614241 80 ntBASIC15.62■□□□□ 0.09
LMX1AQ8TE12 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 BNIP3P1-202ENST00000550043 1585 ntBASIC15.62■□□□□ 0.09
LMX1AQ8TE12 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.62■□□□□ 0.09
LMX1AQ8TE12 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 AC022211.2-201ENST00000585075 2527 ntBASIC15.61■□□□□ 0.09
LMX1AQ8TE12 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 AC017083.2-201ENST00000608069 979 ntBASIC15.61■□□□□ 0.09
LMX1AQ8TE12 AL162274.1-201ENST00000617191 1098 ntBASIC15.61■□□□□ 0.09
LMX1AQ8TE12 MIR6752-201ENST00000618442 71 ntBASIC15.61■□□□□ 0.09
LMX1AQ8TE12 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1AQ8TE12 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AC112492.5-201ENST00000421897 457 ntBASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms