Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 AC026979.3-201ENST00000607315 403 ntBASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 AC007967.4-201ENST00000614700 386 ntBASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 AC093028.1-201ENST00000622998 982 ntBASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 Z92544.3-201ENST00000624747 417 ntBASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 TUBB3P1-201ENST00000405796 1332 ntBASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NUP54Q7Z3B4 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 AL662844.4-201ENST00000606367 2838 ntBASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 AC008677.1-201ENST00000519230 1561 ntBASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 AL035456.1-201ENST00000456064 1369 ntBASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 MIR4453-201ENST00000584019 89 ntBASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms