Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC20.94■□□□□ 0.94
USP54Q70EL1 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20.93■□□□□ 0.94
USP54Q70EL1 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC20.93■□□□□ 0.94
USP54Q70EL1 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC20.93■□□□□ 0.94
USP54Q70EL1 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC20.93■□□□□ 0.94
USP54Q70EL1 AC084346.2-201ENST00000607097 949 ntBASIC20.93■□□□□ 0.94
USP54Q70EL1 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC20.93■□□□□ 0.94
USP54Q70EL1 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
USP54Q70EL1 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC20.93■□□□□ 0.94
USP54Q70EL1 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC20.93■□□□□ 0.94
USP54Q70EL1 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC20.93■□□□□ 0.94
USP54Q70EL1 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC20.93■□□□□ 0.94
USP54Q70EL1 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC20.93■□□□□ 0.94
USP54Q70EL1 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USP54Q70EL1 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
USP54Q70EL1 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP54Q70EL1 MIR1202-201ENST00000408529 83 ntBASIC20.93■□□□□ 0.94
USP54Q70EL1 Z93015.1-201ENST00000451718 390 ntBASIC20.93■□□□□ 0.94
USP54Q70EL1 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC20.93■□□□□ 0.94
USP54Q70EL1 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC20.93■□□□□ 0.94
USP54Q70EL1 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.92■□□□□ 0.94
USP54Q70EL1 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP54Q70EL1 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC20.92■□□□□ 0.94
USP54Q70EL1 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
USP54Q70EL1 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.92■□□□□ 0.94
USP54Q70EL1 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP54Q70EL1 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP54Q70EL1 AC120498.9-201ENST00000339021 3867 ntBASIC20.92■□□□□ 0.94
USP54Q70EL1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.92■□□□□ 0.94
USP54Q70EL1 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP54Q70EL1 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.92■□□□□ 0.94
USP54Q70EL1 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.92■□□□□ 0.94
USP54Q70EL1 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP54Q70EL1 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP54Q70EL1 MIR663B-201ENST00000408361 115 ntBASIC20.92■□□□□ 0.94
USP54Q70EL1 AC004945.1-201ENST00000416738 983 ntBASIC20.92■□□□□ 0.94
USP54Q70EL1 POM121L8P-201ENST00000417732 1281 ntBASIC20.92■□□□□ 0.94
USP54Q70EL1 POM121L9P-203ENST00000441984 1285 ntBASIC20.92■□□□□ 0.94
USP54Q70EL1 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC20.92■□□□□ 0.94
USP54Q70EL1 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC20.92■□□□□ 0.94
USP54Q70EL1 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP54Q70EL1 AC025181.2-201ENST00000606994 802 ntBASIC20.92■□□□□ 0.94
USP54Q70EL1 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC20.92■□□□□ 0.94
USP54Q70EL1 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
USP54Q70EL1 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC20.92■□□□□ 0.94
USP54Q70EL1 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.92■□□□□ 0.94
USP54Q70EL1 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP54Q70EL1 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.91■□□□□ 0.94
USP54Q70EL1 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.91■□□□□ 0.94
USP54Q70EL1 AL138799.1-201ENST00000448213 1675 ntBASIC20.91■□□□□ 0.94
USP54Q70EL1 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.91■□□□□ 0.94
USP54Q70EL1 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
USP54Q70EL1 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC20.91■□□□□ 0.94
USP54Q70EL1 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC20.91■□□□□ 0.94
USP54Q70EL1 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC20.91■□□□□ 0.94
USP54Q70EL1 BX539320.1-201ENST00000623759 877 ntBASIC20.91■□□□□ 0.94
USP54Q70EL1 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.91■□□□□ 0.94
USP54Q70EL1 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP54Q70EL1 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
USP54Q70EL1 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
USP54Q70EL1 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
USP54Q70EL1 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP54Q70EL1 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP54Q70EL1 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC20.9■□□□□ 0.94
USP54Q70EL1 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.9■□□□□ 0.94
USP54Q70EL1 APOA2-204ENST00000464492 530 ntTSL 3 BASIC20.9■□□□□ 0.94
USP54Q70EL1 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC20.9■□□□□ 0.94
USP54Q70EL1 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
USP54Q70EL1 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP54Q70EL1 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC20.9■□□□□ 0.94
USP54Q70EL1 AC106820.3-201ENST00000561653 397 ntBASIC20.9■□□□□ 0.94
USP54Q70EL1 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC20.9■□□□□ 0.94
USP54Q70EL1 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
USP54Q70EL1 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC20.9■□□□□ 0.94
USP54Q70EL1 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC20.9■□□□□ 0.94
USP54Q70EL1 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
USP54Q70EL1 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
USP54Q70EL1 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP54Q70EL1 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP54Q70EL1 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms