Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CL1P78423 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CL1P78423 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CX3CL1P78423 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.05□□□□□ -0.32
CX3CL1P78423 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 MTHFR-217ENST00000641820 1569 ntBASIC13.04□□□□□ -0.32
CX3CL1P78423 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC13.04□□□□□ -0.32
CX3CL1P78423 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 AL355306.1-201ENST00000415580 579 ntBASIC13.04□□□□□ -0.32
CX3CL1P78423 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 HTR5BP-201ENST00000430851 1154 ntBASIC13.04□□□□□ -0.32
CX3CL1P78423 MKNK2P1-201ENST00000437526 628 ntBASIC13.04□□□□□ -0.32
CX3CL1P78423 ACTG1P14-201ENST00000446382 1122 ntBASIC13.04□□□□□ -0.32
CX3CL1P78423 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.04□□□□□ -0.32
CX3CL1P78423 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 QPRT-203ENST00000562473 579 ntTSL 3 BASIC13.04□□□□□ -0.32
CX3CL1P78423 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.04□□□□□ -0.32
CX3CL1P78423 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.04□□□□□ -0.32
CX3CL1P78423 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.04□□□□□ -0.32
CX3CL1P78423 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.04□□□□□ -0.32
CX3CL1P78423 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.04□□□□□ -0.32
CX3CL1P78423 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
CX3CL1P78423 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.04□□□□□ -0.32
CX3CL1P78423 REXO1L8P-201ENST00000604378 1897 ntBASIC13.04□□□□□ -0.32
CX3CL1P78423 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CX3CL1P78423 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CX3CL1P78423 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CX3CL1P78423 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
CX3CL1P78423 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
CX3CL1P78423 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 AC073439.1-201ENST00000624121 1774 ntBASIC13.03□□□□□ -0.32
CX3CL1P78423 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 TFAMP1-201ENST00000412727 736 ntBASIC13.03□□□□□ -0.32
CX3CL1P78423 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.03□□□□□ -0.32
CX3CL1P78423 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.03□□□□□ -0.32
CX3CL1P78423 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.03□□□□□ -0.32
CX3CL1P78423 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.03□□□□□ -0.32
CX3CL1P78423 AC005829.1-201ENST00000570002 483 ntBASIC13.03□□□□□ -0.32
CX3CL1P78423 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.03□□□□□ -0.32
CX3CL1P78423 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
CX3CL1P78423 WDR88-203ENST00000592765 651 ntTSL 5 BASIC13.03□□□□□ -0.32
CX3CL1P78423 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC13.03□□□□□ -0.32
CX3CL1P78423 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CX3CL1P78423 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC13.03□□□□□ -0.32
CX3CL1P78423 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 BSG-215ENST00000618006 1329 ntTSL 2 BASIC13.03□□□□□ -0.32
CX3CL1P78423 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.03□□□□□ -0.32
CX3CL1P78423 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms