Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SPTA1P02549 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.53□□□□□ -0.08
SPTA1P02549 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC14.53□□□□□ -0.08
SPTA1P02549 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SPTA1P02549 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SPTA1P02549 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 SOCS2P1-201ENST00000417727 557 ntBASIC14.53□□□□□ -0.08
SPTA1P02549 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 AC026954.1-201ENST00000429771 1293 ntBASIC14.53□□□□□ -0.08
SPTA1P02549 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.53□□□□□ -0.08
SPTA1P02549 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.53□□□□□ -0.08
SPTA1P02549 BX284668.4-201ENST00000453917 508 ntBASIC14.53□□□□□ -0.08
SPTA1P02549 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.53□□□□□ -0.08
SPTA1P02549 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.53□□□□□ -0.08
SPTA1P02549 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.53□□□□□ -0.08
SPTA1P02549 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.53□□□□□ -0.08
SPTA1P02549 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SPTA1P02549 Z97205.2-201ENST00000564697 1639 ntBASIC14.53□□□□□ -0.08
SPTA1P02549 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
SPTA1P02549 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
SPTA1P02549 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
SPTA1P02549 AC016694.1-201ENST00000434179 700 ntBASIC14.52□□□□□ -0.08
SPTA1P02549 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC14.52□□□□□ -0.08
SPTA1P02549 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC14.52□□□□□ -0.08
SPTA1P02549 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC14.52□□□□□ -0.08
SPTA1P02549 EIF4HP1-201ENST00000453115 687 ntBASIC14.52□□□□□ -0.08
SPTA1P02549 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.52□□□□□ -0.08
SPTA1P02549 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.52□□□□□ -0.08
SPTA1P02549 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.52□□□□□ -0.08
SPTA1P02549 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.52□□□□□ -0.08
SPTA1P02549 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC14.52□□□□□ -0.08
SPTA1P02549 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.52□□□□□ -0.08
SPTA1P02549 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC14.52□□□□□ -0.08
SPTA1P02549 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
SPTA1P02549 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.08
SPTA1P02549 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SPTA1P02549 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
SPTA1P02549 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 PP12613-201ENST00000424958 2230 ntBASIC14.52□□□□□ -0.09
SPTA1P02549 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.52□□□□□ -0.09
SPTA1P02549 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.52□□□□□ -0.09
SPTA1P02549 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SPTA1P02549 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.52□□□□□ -0.09
SPTA1P02549 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
SPTA1P02549 AC234644.1-201ENST00000406065 370 ntBASIC14.52□□□□□ -0.09
SPTA1P02549 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.52□□□□□ -0.09
SPTA1P02549 AC009486.1-201ENST00000569860 813 ntBASIC14.52□□□□□ -0.09
SPTA1P02549 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.52□□□□□ -0.09
SPTA1P02549 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.52□□□□□ -0.09
SPTA1P02549 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SPTA1P02549 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
SPTA1P02549 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
SPTA1P02549 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
SPTA1P02549 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.51□□□□□ -0.09
SPTA1P02549 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SPTA1P02549 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC14.51□□□□□ -0.09
SPTA1P02549 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
SPTA1P02549 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SPTA1P02549 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SPTA1P02549 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.51□□□□□ -0.09
SPTA1P02549 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC14.51□□□□□ -0.09
SPTA1P02549 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SPTA1P02549 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
SPTA1P02549 AL133373.2-201ENST00000623187 2828 ntBASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms