Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 AC105233.2-201ENST00000523697 349 ntBASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 AF228730.5-201ENST00000530288 346 ntBASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 AC106730.1-201ENST00000566722 1090 ntBASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 AC061975.2-201ENST00000581722 295 ntBASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 AKAP8P1-201ENST00000434743 1349 ntBASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMCH1Q9UPQ0 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 KRT18P3-201ENST00000451602 1288 ntBASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 AC140113.2-201ENST00000604370 208 ntBASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 AC027601.4-201ENST00000611259 610 ntBASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 TMBIM7P-203ENST00000641617 1718 ntBASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMCH1Q9UPQ0 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 FER1L4-210ENST00000615531 5998 ntBASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 AC024267.1-201ENST00000582320 895 ntBASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 FAM197Y3-203ENST00000618346 717 ntBASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMCH1Q9UPQ0 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms