Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CU634019.7-201ENST00000624153 1185 ntBASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 FP236241.2-201ENST00000624906 1185 ntBASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SHROOM4Q9ULL8 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 TP73-213ENST00000604479 1623 ntTSL 5 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 MIR663B-201ENST00000408361 115 ntBASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 FXNP2-201ENST00000411625 547 ntBASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 Z97205.2-201ENST00000564697 1639 ntBASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHROOM4Q9ULL8 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 FOS-206ENST00000555347 1280 ntTSL 2 BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 KRT8P22-201ENST00000562317 1415 ntBASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC30.29■■■□□ 2.44
SHROOM4Q9ULL8 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 AP001889.1-201ENST00000525414 633 ntBASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SHROOM4Q9ULL8 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 TPO-206ENST00000382269 1155 ntTSL 5 BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 MIR6727-201ENST00000620702 65 ntBASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 AL592424.1-201ENST00000563624 1536 ntBASIC30.27■■■□□ 2.44
SHROOM4Q9ULL8 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 PCDHA12-202ENST00000613593 2588 ntBASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 AC105129.2-201ENST00000559536 390 ntBASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SHROOM4Q9ULL8 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC30.26■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms