Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.34□□□□□ -0.11
MMP28Q9H239 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 LINC00895-201ENST00000629028 1637 ntBASIC14.33□□□□□ -0.11
MMP28Q9H239 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
MMP28Q9H239 LINC01101-201ENST00000622953 1884 ntBASIC14.33□□□□□ -0.11
MMP28Q9H239 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
MMP28Q9H239 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.33□□□□□ -0.11
MMP28Q9H239 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
MMP28Q9H239 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
MMP28Q9H239 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.33□□□□□ -0.11
MMP28Q9H239 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
MMP28Q9H239 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
MMP28Q9H239 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.33□□□□□ -0.12
MMP28Q9H239 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.33□□□□□ -0.12
MMP28Q9H239 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.33□□□□□ -0.12
MMP28Q9H239 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 ENSA-206ENST00000361631 725 ntTSL 2 BASIC14.33□□□□□ -0.12
MMP28Q9H239 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.33□□□□□ -0.12
MMP28Q9H239 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC14.33□□□□□ -0.12
MMP28Q9H239 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
MMP28Q9H239 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.33□□□□□ -0.12
MMP28Q9H239 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.12
MMP28Q9H239 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC14.33□□□□□ -0.12
MMP28Q9H239 COX5A-204ENST00000567270 579 ntTSL 3 BASIC14.33□□□□□ -0.12
MMP28Q9H239 AC109462.3-201ENST00000573934 613 ntBASIC14.33□□□□□ -0.12
MMP28Q9H239 CCNC-219ENST00000627680 896 ntTSL 5 BASIC14.33□□□□□ -0.12
MMP28Q9H239 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
MMP28Q9H239 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
MMP28Q9H239 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
MMP28Q9H239 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.33□□□□□ -0.12
MMP28Q9H239 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.33□□□□□ -0.12
MMP28Q9H239 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.33□□□□□ -0.12
MMP28Q9H239 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MMP28Q9H239 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.32□□□□□ -0.12
MMP28Q9H239 AC041040.2-201ENST00000622926 2899 ntBASIC14.32□□□□□ -0.12
MMP28Q9H239 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
MMP28Q9H239 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
MMP28Q9H239 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 RCN1P2-201ENST00000398357 915 ntBASIC14.32□□□□□ -0.12
MMP28Q9H239 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 NUS1P2-201ENST00000417358 873 ntBASIC14.32□□□□□ -0.12
MMP28Q9H239 THAP5-204ENST00000438865 868 ntTSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 NUS1P1-201ENST00000446295 882 ntBASIC14.32□□□□□ -0.12
MMP28Q9H239 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC14.32□□□□□ -0.12
MMP28Q9H239 BET1L-206ENST00000486280 665 ntTSL 3 BASIC14.32□□□□□ -0.12
MMP28Q9H239 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC14.32□□□□□ -0.12
MMP28Q9H239 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
MMP28Q9H239 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC14.32□□□□□ -0.12
MMP28Q9H239 AC019129.2-201ENST00000609837 1235 ntBASIC14.32□□□□□ -0.12
MMP28Q9H239 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.32□□□□□ -0.12
MMP28Q9H239 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.32□□□□□ -0.12
MMP28Q9H239 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.32□□□□□ -0.12
MMP28Q9H239 INTS4P1-201ENST00000438455 1935 ntBASIC14.32□□□□□ -0.12
MMP28Q9H239 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms