Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC16.51■□□□□ 0.23
CDX2Q99626 DGAT2L7P-201ENST00000602462 744 ntBASIC16.51■□□□□ 0.23
CDX2Q99626 AP003392.6-201ENST00000607709 325 ntBASIC16.51■□□□□ 0.23
CDX2Q99626 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.51■□□□□ 0.23
CDX2Q99626 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
CDX2Q99626 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CDX2Q99626 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.51■□□□□ 0.23
CDX2Q99626 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
CDX2Q99626 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.51■□□□□ 0.23
CDX2Q99626 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.51■□□□□ 0.23
CDX2Q99626 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.51■□□□□ 0.23
CDX2Q99626 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
CDX2Q99626 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.51■□□□□ 0.23
CDX2Q99626 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.51■□□□□ 0.23
CDX2Q99626 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX2Q99626 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CDX2Q99626 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CDX2Q99626 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
CDX2Q99626 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CDX2Q99626 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CDX2Q99626 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CDX2Q99626 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC16.5■□□□□ 0.23
CDX2Q99626 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX2Q99626 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX2Q99626 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX2Q99626 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX2Q99626 AC106794.1-201ENST00000506935 792 ntBASIC16.5■□□□□ 0.23
CDX2Q99626 AC116345.2-201ENST00000512837 523 ntBASIC16.5■□□□□ 0.23
CDX2Q99626 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.5■□□□□ 0.23
CDX2Q99626 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.5■□□□□ 0.23
CDX2Q99626 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
CDX2Q99626 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
CDX2Q99626 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CDX2Q99626 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDX2Q99626 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
CDX2Q99626 BNIP3P1-202ENST00000550043 1585 ntBASIC16.5■□□□□ 0.23
CDX2Q99626 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CDX2Q99626 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.5■□□□□ 0.23
CDX2Q99626 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.49■□□□□ 0.23
CDX2Q99626 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.49■□□□□ 0.23
CDX2Q99626 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.49■□□□□ 0.23
CDX2Q99626 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.49■□□□□ 0.23
CDX2Q99626 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CDX2Q99626 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.49■□□□□ 0.23
CDX2Q99626 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
CDX2Q99626 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.49■□□□□ 0.23
CDX2Q99626 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
CDX2Q99626 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.49■□□□□ 0.23
CDX2Q99626 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDX2Q99626 RPL18P13-201ENST00000478088 569 ntBASIC16.49■□□□□ 0.23
CDX2Q99626 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.49■□□□□ 0.23
CDX2Q99626 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.49■□□□□ 0.23
CDX2Q99626 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC16.49■□□□□ 0.23
CDX2Q99626 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CDX2Q99626 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.49■□□□□ 0.23
CDX2Q99626 AL023803.2-201ENST00000620080 638 ntBASIC16.49■□□□□ 0.23
CDX2Q99626 BX539320.1-201ENST00000623759 877 ntBASIC16.49■□□□□ 0.23
CDX2Q99626 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.49■□□□□ 0.23
CDX2Q99626 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms