Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC005034.1-201ENST00000426657 489 ntBASIC18.86■□□□□ 0.61
NUP88Q99567 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.86■□□□□ 0.61
NUP88Q99567 SPDYE18-201ENST00000510091 1050 ntBASIC18.86■□□□□ 0.61
NUP88Q99567 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.86■□□□□ 0.61
NUP88Q99567 AC135586.1-201ENST00000539323 574 ntBASIC18.86■□□□□ 0.61
NUP88Q99567 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
NUP88Q99567 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NUP88Q99567 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.86■□□□□ 0.61
NUP88Q99567 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.86■□□□□ 0.61
NUP88Q99567 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.86■□□□□ 0.61
NUP88Q99567 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.86■□□□□ 0.61
NUP88Q99567 AL662799.1-202ENST00000614205 422 ntBASIC18.86■□□□□ 0.61
NUP88Q99567 AL035252.4-201ENST00000624174 288 ntBASIC18.86■□□□□ 0.61
NUP88Q99567 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
NUP88Q99567 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.86■□□□□ 0.61
NUP88Q99567 AC008894.3-201ENST00000624324 3103 ntBASIC18.86■□□□□ 0.61
NUP88Q99567 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
NUP88Q99567 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.86■□□□□ 0.61
NUP88Q99567 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NUP88Q99567 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
NUP88Q99567 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
NUP88Q99567 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
NUP88Q99567 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
NUP88Q99567 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.86■□□□□ 0.61
NUP88Q99567 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.86■□□□□ 0.61
NUP88Q99567 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NUP88Q99567 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NUP88Q99567 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NUP88Q99567 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.85■□□□□ 0.61
NUP88Q99567 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.85■□□□□ 0.61
NUP88Q99567 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
NUP88Q99567 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
NUP88Q99567 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.85■□□□□ 0.61
NUP88Q99567 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.85■□□□□ 0.61
NUP88Q99567 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.85■□□□□ 0.61
NUP88Q99567 PIN1P1-201ENST00000412108 996 ntBASIC18.85■□□□□ 0.61
NUP88Q99567 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.85■□□□□ 0.61
NUP88Q99567 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.85■□□□□ 0.61
NUP88Q99567 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.85■□□□□ 0.61
NUP88Q99567 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.85■□□□□ 0.61
NUP88Q99567 RN7SL618P-201ENST00000477850 296 ntBASIC18.85■□□□□ 0.61
NUP88Q99567 AC104794.3-201ENST00000566840 1248 ntBASIC18.85■□□□□ 0.61
NUP88Q99567 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.85■□□□□ 0.61
NUP88Q99567 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.85■□□□□ 0.61
NUP88Q99567 SPDYE22P-201ENST00000582158 798 ntBASIC18.85■□□□□ 0.61
NUP88Q99567 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.85■□□□□ 0.61
NUP88Q99567 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.85■□□□□ 0.61
NUP88Q99567 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.85■□□□□ 0.61
NUP88Q99567 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.85■□□□□ 0.61
NUP88Q99567 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.85■□□□□ 0.61
NUP88Q99567 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
NUP88Q99567 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.85■□□□□ 0.61
NUP88Q99567 AL136982.4-201ENST00000437689 1740 ntBASIC18.85■□□□□ 0.61
NUP88Q99567 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
NUP88Q99567 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NUP88Q99567 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.85■□□□□ 0.61
NUP88Q99567 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
NUP88Q99567 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.84■□□□□ 0.61
NUP88Q99567 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.84■□□□□ 0.61
NUP88Q99567 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
NUP88Q99567 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.84■□□□□ 0.61
NUP88Q99567 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18.84■□□□□ 0.61
NUP88Q99567 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
NUP88Q99567 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.84■□□□□ 0.61
NUP88Q99567 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.84■□□□□ 0.61
NUP88Q99567 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.84■□□□□ 0.61
NUP88Q99567 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 AC005225.4-201ENST00000557330 545 ntBASIC18.84■□□□□ 0.61
NUP88Q99567 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.84■□□□□ 0.61
NUP88Q99567 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.84■□□□□ 0.61
NUP88Q99567 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.84■□□□□ 0.61
NUP88Q99567 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NUP88Q99567 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.84■□□□□ 0.61
NUP88Q99567 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms