Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 TARDBPP1-201ENST00000442013 1203 ntBASIC16.32■□□□□ 0.2
CHFRQ96EP1 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 KRT8P37-201ENST00000451609 1420 ntBASIC16.32■□□□□ 0.2
CHFRQ96EP1 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 POU5F1P6-201ENST00000466990 990 ntBASIC16.32■□□□□ 0.2
CHFRQ96EP1 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.32■□□□□ 0.2
CHFRQ96EP1 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 BNIP3P1-202ENST00000550043 1585 ntBASIC16.32■□□□□ 0.2
CHFRQ96EP1 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.32■□□□□ 0.2
CHFRQ96EP1 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHFRQ96EP1 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 KRT18P64-201ENST00000434946 1219 ntBASIC16.31■□□□□ 0.2
CHFRQ96EP1 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 AC015936.2-201ENST00000593177 259 ntBASIC16.31■□□□□ 0.2
CHFRQ96EP1 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 AD000864.1-201ENST00000624076 2295 ntBASIC16.31■□□□□ 0.2
CHFRQ96EP1 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CHFRQ96EP1 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHFRQ96EP1 AC092171.3-201ENST00000610122 2651 ntBASIC16.31■□□□□ 0.2
CHFRQ96EP1 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 KRT223P-202ENST00000449164 1292 ntBASIC16.3■□□□□ 0.2
CHFRQ96EP1 BNIP3P42-201ENST00000454982 569 ntBASIC16.3■□□□□ 0.2
CHFRQ96EP1 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 AC243562.2-201ENST00000561247 970 ntBASIC16.3■□□□□ 0.2
CHFRQ96EP1 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 BTNL10-201ENST00000595971 695 ntBASIC16.3■□□□□ 0.2
CHFRQ96EP1 BNIP3P29-201ENST00000598302 571 ntBASIC16.3■□□□□ 0.2
CHFRQ96EP1 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 AC011447.5-201ENST00000616168 564 ntBASIC16.3■□□□□ 0.2
CHFRQ96EP1 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.3■□□□□ 0.2
CHFRQ96EP1 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHFRQ96EP1 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
CHFRQ96EP1 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.29■□□□□ 0.2
CHFRQ96EP1 REXO1L6P-201ENST00000603433 1515 ntBASIC16.29■□□□□ 0.2
CHFRQ96EP1 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHFRQ96EP1 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHFRQ96EP1 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms