Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC241585.1-201ENST00000433527 519 ntBASIC14.93□□□□□ -0.02
RNF4P78317 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.93□□□□□ -0.02
RNF4P78317 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.93□□□□□ -0.02
RNF4P78317 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.93□□□□□ -0.02
RNF4P78317 RNA5SP421-201ENST00000516864 134 ntBASIC14.93□□□□□ -0.02
RNF4P78317 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.93□□□□□ -0.02
RNF4P78317 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.93□□□□□ -0.02
RNF4P78317 AC243562.2-201ENST00000561247 970 ntBASIC14.93□□□□□ -0.02
RNF4P78317 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.93□□□□□ -0.02
RNF4P78317 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.93□□□□□ -0.02
RNF4P78317 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.93□□□□□ -0.02
RNF4P78317 AC011467.4-201ENST00000594891 528 ntBASIC14.93□□□□□ -0.02
RNF4P78317 AL590560.3-201ENST00000623350 461 ntBASIC14.93□□□□□ -0.02
RNF4P78317 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
RNF4P78317 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
RNF4P78317 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.93□□□□□ -0.02
RNF4P78317 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
RNF4P78317 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
RNF4P78317 AL162727.3-201ENST00000635661 2787 ntBASIC14.93□□□□□ -0.02
RNF4P78317 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 CYP4F24P-201ENST00000586049 1580 ntBASIC14.93□□□□□ -0.02
RNF4P78317 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.93□□□□□ -0.02
RNF4P78317 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.93□□□□□ -0.02
RNF4P78317 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
RNF4P78317 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
RNF4P78317 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RNF4P78317 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
RNF4P78317 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.92□□□□□ -0.02
RNF4P78317 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
RNF4P78317 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 AC004987.2-201ENST00000395959 1148 ntBASIC14.92□□□□□ -0.02
RNF4P78317 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.92□□□□□ -0.02
RNF4P78317 SPDYE17-201ENST00000412399 783 ntBASIC14.92□□□□□ -0.02
RNF4P78317 AL080243.2-201ENST00000418783 582 ntBASIC14.92□□□□□ -0.02
RNF4P78317 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.92□□□□□ -0.02
RNF4P78317 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.92□□□□□ -0.02
RNF4P78317 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.92□□□□□ -0.02
RNF4P78317 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.92□□□□□ -0.02
RNF4P78317 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 TEX28P1-201ENST00000613479 1221 ntBASIC14.92□□□□□ -0.02
RNF4P78317 TEX28P2-201ENST00000617764 1221 ntBASIC14.92□□□□□ -0.02
RNF4P78317 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 KRT8P12-202ENST00000472924 1397 ntBASIC14.92□□□□□ -0.02
RNF4P78317 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.92□□□□□ -0.02
RNF4P78317 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
RNF4P78317 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
RNF4P78317 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
RNF4P78317 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
RNF4P78317 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.92□□□□□ -0.02
RNF4P78317 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.92□□□□□ -0.02
RNF4P78317 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RNF4P78317 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 PCDHB19P-201ENST00000570871 2371 ntBASIC14.91□□□□□ -0.02
RNF4P78317 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.91□□□□□ -0.02
RNF4P78317 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
RNF4P78317 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms