Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CUX1P39880 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CUX1P39880 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CUX1P39880 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CUX1P39880 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC26.41■■□□□ 1.82
CUX1P39880 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CUX1P39880 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC26.41■■□□□ 1.82
CUX1P39880 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC26.41■■□□□ 1.82
CUX1P39880 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC26.41■■□□□ 1.82
CUX1P39880 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CUX1P39880 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CUX1P39880 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CUX1P39880 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CUX1P39880 HNRNPA1P32-201ENST00000396326 963 ntBASIC26.4■■□□□ 1.82
CUX1P39880 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC26.4■■□□□ 1.82
CUX1P39880 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC26.4■■□□□ 1.82
CUX1P39880 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC26.4■■□□□ 1.82
CUX1P39880 AP003171.2-201ENST00000528208 925 ntBASIC26.4■■□□□ 1.82
CUX1P39880 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC26.4■■□□□ 1.82
CUX1P39880 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC26.4■■□□□ 1.82
CUX1P39880 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC26.4■■□□□ 1.82
CUX1P39880 AC015967.2-201ENST00000624092 234 ntBASIC26.4■■□□□ 1.82
CUX1P39880 AC006435.4-201ENST00000625037 234 ntBASIC26.4■■□□□ 1.82
CUX1P39880 AL356737.1-201ENST00000634391 234 ntBASIC26.4■■□□□ 1.82
CUX1P39880 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC26.4■■□□□ 1.82
CUX1P39880 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CUX1P39880 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CUX1P39880 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC26.4■■□□□ 1.82
CUX1P39880 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC26.4■■□□□ 1.82
CUX1P39880 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CUX1P39880 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC26.4■■□□□ 1.82
CUX1P39880 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC26.4■■□□□ 1.82
CUX1P39880 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CUX1P39880 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC26.39■■□□□ 1.82
CUX1P39880 KRTAP10-13P-201ENST00000412914 571 ntBASIC26.39■■□□□ 1.82
CUX1P39880 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC26.39■■□□□ 1.82
CUX1P39880 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CUX1P39880 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC26.39■■□□□ 1.82
CUX1P39880 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC26.39■■□□□ 1.82
CUX1P39880 AC016629.1-201ENST00000596579 586 ntBASIC26.39■■□□□ 1.82
CUX1P39880 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC26.39■■□□□ 1.82
CUX1P39880 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
CUX1P39880 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
CUX1P39880 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CUX1P39880 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CUX1P39880 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
CUX1P39880 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC26.39■■□□□ 1.81
CUX1P39880 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
CUX1P39880 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.81
CUX1P39880 SUN1-204ENST00000403868 978 ntTSL 2 BASIC26.39■■□□□ 1.81
CUX1P39880 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC26.39■■□□□ 1.81
CUX1P39880 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
CUX1P39880 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
CUX1P39880 RNA5SP486-201ENST00000515961 83 ntBASIC26.39■■□□□ 1.81
CUX1P39880 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC26.39■■□□□ 1.81
CUX1P39880 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC26.39■■□□□ 1.81
CUX1P39880 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC26.39■■□□□ 1.81
CUX1P39880 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC26.39■■□□□ 1.81
CUX1P39880 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC26.38■■□□□ 1.81
CUX1P39880 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CUX1P39880 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC26.38■■□□□ 1.81
CUX1P39880 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CUX1P39880 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CUX1P39880 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC26.38■■□□□ 1.81
CUX1P39880 AC015818.8-201ENST00000587907 1519 ntBASIC26.38■■□□□ 1.81
CUX1P39880 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
CUX1P39880 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC26.38■■□□□ 1.81
CUX1P39880 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC26.38■■□□□ 1.81
CUX1P39880 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
CUX1P39880 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
CUX1P39880 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC26.38■■□□□ 1.81
CUX1P39880 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC26.38■■□□□ 1.81
CUX1P39880 ETV2-208ENST00000621247 941 ntTSL 5 BASIC26.38■■□□□ 1.81
CUX1P39880 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CUX1P39880 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
CUX1P39880 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC26.38■■□□□ 1.81
CUX1P39880 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC26.37■■□□□ 1.81
CUX1P39880 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
CUX1P39880 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
CUX1P39880 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
CUX1P39880 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 FXNP2-201ENST00000411625 547 ntBASIC26.37■■□□□ 1.81
CUX1P39880 EIF4HP1-201ENST00000453115 687 ntBASIC26.37■■□□□ 1.81
CUX1P39880 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC26.37■■□□□ 1.81
CUX1P39880 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
CUX1P39880 FOS-206ENST00000555347 1280 ntTSL 2 BASIC26.37■■□□□ 1.81
CUX1P39880 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC26.37■■□□□ 1.81
CUX1P39880 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
CUX1P39880 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
CUX1P39880 AL023775.1-201ENST00000454907 1746 ntBASIC26.37■■□□□ 1.81
CUX1P39880 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
CUX1P39880 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
CUX1P39880 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms