Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VCANP13611 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC16.36■□□□□ 0.21
VCANP13611 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.36■□□□□ 0.21
VCANP13611 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
VCANP13611 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.36■□□□□ 0.21
VCANP13611 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 AC092171.5-201ENST00000608012 942 ntBASIC16.36■□□□□ 0.21
VCANP13611 AC007881.3-201ENST00000608897 607 ntBASIC16.36■□□□□ 0.21
VCANP13611 AC100757.4-201ENST00000626934 759 ntBASIC16.36■□□□□ 0.21
VCANP13611 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.36■□□□□ 0.21
VCANP13611 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.36■□□□□ 0.21
VCANP13611 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCANP13611 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VCANP13611 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VCANP13611 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 PIN4P1-201ENST00000451079 396 ntBASIC16.35■□□□□ 0.21
VCANP13611 AC138894.2-201ENST00000602838 371 ntBASIC16.35■□□□□ 0.21
VCANP13611 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.35■□□□□ 0.21
VCANP13611 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.35■□□□□ 0.21
VCANP13611 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC16.35■□□□□ 0.21
VCANP13611 AC005730.2-201ENST00000564549 1184 ntBASIC16.35■□□□□ 0.21
VCANP13611 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.35■□□□□ 0.21
VCANP13611 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.35■□□□□ 0.21
VCANP13611 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 RNA5SP486-201ENST00000515961 83 ntBASIC16.35■□□□□ 0.21
VCANP13611 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VCANP13611 AL161670.2-201ENST00000557650 1227 ntBASIC16.35■□□□□ 0.21
VCANP13611 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.35■□□□□ 0.21
VCANP13611 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 AC009053.2-201ENST00000563701 2365 ntBASIC16.35■□□□□ 0.21
VCANP13611 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
VCANP13611 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCANP13611 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.34■□□□□ 0.21
VCANP13611 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.34■□□□□ 0.21
VCANP13611 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VCANP13611 AL139010.1-201ENST00000454878 894 ntBASIC16.34■□□□□ 0.21
VCANP13611 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.34■□□□□ 0.21
VCANP13611 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC16.34■□□□□ 0.21
VCANP13611 RPL17P45-201ENST00000586289 509 ntBASIC16.34■□□□□ 0.21
VCANP13611 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VCANP13611 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 AC004899.1-201ENST00000424687 1714 ntBASIC16.34■□□□□ 0.21
VCANP13611 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.34■□□□□ 0.21
VCANP13611 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.34■□□□□ 0.21
VCANP13611 SERBP1P2-201ENST00000436888 1164 ntBASIC16.34■□□□□ 0.21
VCANP13611 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.34■□□□□ 0.21
VCANP13611 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.34■□□□□ 0.21
VCANP13611 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VCANP13611 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.34■□□□□ 0.21
VCANP13611 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.34■□□□□ 0.21
VCANP13611 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 AC011676.5-201ENST00000624864 2660 ntBASIC16.34■□□□□ 0.21
VCANP13611 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.34■□□□□ 0.21
VCANP13611 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.34■□□□□ 0.21
VCANP13611 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VCANP13611 VDAC1P7-201ENST00000462417 847 ntBASIC16.34■□□□□ 0.21
VCANP13611 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms