Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC20.96■□□□□ 0.95
COL3A1P02461 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL3A1P02461 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.96■□□□□ 0.95
COL3A1P02461 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.96■□□□□ 0.95
COL3A1P02461 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC20.96■□□□□ 0.95
COL3A1P02461 U91328.1-201ENST00000437528 223 ntBASIC20.96■□□□□ 0.95
COL3A1P02461 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC20.96■□□□□ 0.95
COL3A1P02461 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.96■□□□□ 0.95
COL3A1P02461 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL3A1P02461 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL3A1P02461 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC20.96■□□□□ 0.95
COL3A1P02461 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
COL3A1P02461 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.96■□□□□ 0.95
COL3A1P02461 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
COL3A1P02461 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL3A1P02461 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
COL3A1P02461 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC20.96■□□□□ 0.95
COL3A1P02461 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
COL3A1P02461 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
COL3A1P02461 AC079776.1-201ENST00000401540 1152 ntBASIC20.95■□□□□ 0.94
COL3A1P02461 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL3A1P02461 GAPDHP40-201ENST00000505218 1006 ntBASIC20.95■□□□□ 0.94
COL3A1P02461 PAM16-204ENST00000571941 674 ntTSL 3 BASIC20.95■□□□□ 0.94
COL3A1P02461 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL3A1P02461 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.95■□□□□ 0.94
COL3A1P02461 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC20.95■□□□□ 0.94
COL3A1P02461 HNRNPA1P48-201ENST00000562726 1377 ntBASIC20.95■□□□□ 0.94
COL3A1P02461 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL3A1P02461 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL3A1P02461 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.95■□□□□ 0.94
COL3A1P02461 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.95■□□□□ 0.94
COL3A1P02461 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC20.95■□□□□ 0.94
COL3A1P02461 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.95■□□□□ 0.94
COL3A1P02461 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL3A1P02461 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
COL3A1P02461 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL3A1P02461 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
COL3A1P02461 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 USP32P1-208ENST00000506594 1164 ntBASIC20.94■□□□□ 0.94
COL3A1P02461 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
COL3A1P02461 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
COL3A1P02461 AC132938.2-201ENST00000579188 680 ntBASIC20.94■□□□□ 0.94
COL3A1P02461 AC107373.2-201ENST00000607735 490 ntBASIC20.94■□□□□ 0.94
COL3A1P02461 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.94■□□□□ 0.94
COL3A1P02461 AL358472.5-202ENST00000641448 1267 ntBASIC20.94■□□□□ 0.94
COL3A1P02461 AL591163.1-201ENST00000641757 987 ntBASIC20.94■□□□□ 0.94
COL3A1P02461 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
COL3A1P02461 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
COL3A1P02461 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.94■□□□□ 0.94
COL3A1P02461 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.94■□□□□ 0.94
COL3A1P02461 AC022188.1-201ENST00000620960 1664 ntBASIC20.94■□□□□ 0.94
COL3A1P02461 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
COL3A1P02461 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.94■□□□□ 0.94
COL3A1P02461 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.94■□□□□ 0.94
COL3A1P02461 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC20.94■□□□□ 0.94
COL3A1P02461 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.94■□□□□ 0.94
COL3A1P02461 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC20.94■□□□□ 0.94
COL3A1P02461 AC027307.3-201ENST00000594262 1100 ntBASIC20.94■□□□□ 0.94
COL3A1P02461 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.94■□□□□ 0.94
COL3A1P02461 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL3A1P02461 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms