Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC22.2■■□□□ 1.14
NPHP4O75161 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC22.2■■□□□ 1.14
NPHP4O75161 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC22.2■■□□□ 1.14
NPHP4O75161 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
NPHP4O75161 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC22.2■■□□□ 1.14
NPHP4O75161 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
NPHP4O75161 AL133267.1-201ENST00000398220 340 ntBASIC22.2■■□□□ 1.14
NPHP4O75161 KLF2P2-201ENST00000416807 1039 ntBASIC22.2■■□□□ 1.14
NPHP4O75161 AC234782.1-201ENST00000451950 919 ntBASIC22.2■■□□□ 1.14
NPHP4O75161 KRT18P66-201ENST00000452970 1269 ntBASIC22.2■■□□□ 1.14
NPHP4O75161 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC22.2■■□□□ 1.14
NPHP4O75161 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
NPHP4O75161 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP4O75161 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC22.2■■□□□ 1.14
NPHP4O75161 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC22.2■■□□□ 1.14
NPHP4O75161 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC22.2■■□□□ 1.14
NPHP4O75161 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC22.2■■□□□ 1.14
NPHP4O75161 AL138799.1-201ENST00000448213 1675 ntBASIC22.2■■□□□ 1.14
NPHP4O75161 NF2-208ENST00000403435 2568 ntTSL 5 BASIC22.2■■□□□ 1.14
NPHP4O75161 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC22.19■■□□□ 1.14
NPHP4O75161 REXO1L1P-202ENST00000608646 1974 ntBASIC22.19■■□□□ 1.14
NPHP4O75161 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP4O75161 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP4O75161 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP4O75161 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC22.19■■□□□ 1.14
NPHP4O75161 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC22.19■■□□□ 1.14
NPHP4O75161 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC22.19■■□□□ 1.14
NPHP4O75161 AL596276.2-201ENST00000447525 331 ntBASIC22.19■■□□□ 1.14
NPHP4O75161 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP4O75161 POU5F1P6-201ENST00000466990 990 ntBASIC22.19■■□□□ 1.14
NPHP4O75161 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC22.19■■□□□ 1.14
NPHP4O75161 RN7SL736P-201ENST00000613111 269 ntBASIC22.19■■□□□ 1.14
NPHP4O75161 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
NPHP4O75161 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC22.19■■□□□ 1.14
NPHP4O75161 GATB-213ENST00000515812 1893 ntTSL 5 BASIC22.19■■□□□ 1.14
NPHP4O75161 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC22.19■■□□□ 1.14
NPHP4O75161 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
NPHP4O75161 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
NPHP4O75161 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
NPHP4O75161 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC22.19■■□□□ 1.14
NPHP4O75161 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC22.18■■□□□ 1.14
NPHP4O75161 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
NPHP4O75161 AP001282.1-201ENST00000531301 1499 ntBASIC22.18■■□□□ 1.14
NPHP4O75161 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
NPHP4O75161 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
NPHP4O75161 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC22.18■■□□□ 1.14
NPHP4O75161 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC22.18■■□□□ 1.14
NPHP4O75161 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC22.18■■□□□ 1.14
NPHP4O75161 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 OARD1-204ENST00000464633 717 ntTSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC22.18■■□□□ 1.14
NPHP4O75161 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC22.18■■□□□ 1.14
NPHP4O75161 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC22.18■■□□□ 1.14
NPHP4O75161 AC011491.1-203ENST00000637688 543 ntBASIC22.18■■□□□ 1.14
NPHP4O75161 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
NPHP4O75161 AC134043.2-201ENST00000624206 2238 ntBASIC22.18■■□□□ 1.14
NPHP4O75161 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
NPHP4O75161 FST-202ENST00000396947 2538 ntTSL 5 BASIC22.18■■□□□ 1.14
NPHP4O75161 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
NPHP4O75161 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 TK1-203ENST00000588734 1681 ntTSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
NPHP4O75161 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
NPHP4O75161 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
NPHP4O75161 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.17■■□□□ 1.14
NPHP4O75161 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
NPHP4O75161 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NPHP4O75161 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC22.17■■□□□ 1.14
NPHP4O75161 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC22.17■■□□□ 1.14
NPHP4O75161 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NPHP4O75161 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC22.17■■□□□ 1.14
NPHP4O75161 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
NPHP4O75161 TPM3P8-201ENST00000330554 643 ntBASIC22.17■■□□□ 1.14
NPHP4O75161 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
NPHP4O75161 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC22.17■■□□□ 1.14
NPHP4O75161 AL627389.1-201ENST00000413508 1182 ntBASIC22.17■■□□□ 1.14
NPHP4O75161 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
NPHP4O75161 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
NPHP4O75161 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC22.17■■□□□ 1.14
NPHP4O75161 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
NPHP4O75161 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC22.17■■□□□ 1.14
NPHP4O75161 AL161670.2-201ENST00000557650 1227 ntBASIC22.17■■□□□ 1.14
NPHP4O75161 NPM1P43-201ENST00000558669 786 ntBASIC22.17■■□□□ 1.14
NPHP4O75161 PPY2P-201ENST00000582808 702 ntBASIC22.17■■□□□ 1.14
NPHP4O75161 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
NPHP4O75161 AC073352.2-201ENST00000609385 439 ntBASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms