Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 FAM8A3P-201ENST00000427218 844 ntBASIC16.23■□□□□ 0.19
DKK3Q9UBP4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
DKK3Q9UBP4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.22■□□□□ 0.19
DKK3Q9UBP4 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.22■□□□□ 0.19
DKK3Q9UBP4 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 ZNF890P-202ENST00000530367 1156 ntBASIC16.22■□□□□ 0.19
DKK3Q9UBP4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 AC092364.2-202ENST00000597012 1073 ntBASIC16.22■□□□□ 0.19
DKK3Q9UBP4 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
DKK3Q9UBP4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 AL691432.1-201ENST00000596308 1422 ntBASIC16.21■□□□□ 0.19
DKK3Q9UBP4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 AC004987.2-201ENST00000395959 1148 ntBASIC16.21■□□□□ 0.19
DKK3Q9UBP4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.21■□□□□ 0.19
DKK3Q9UBP4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 SERBP1P3-201ENST00000459980 809 ntBASIC16.21■□□□□ 0.19
DKK3Q9UBP4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 AL844908.2-201ENST00000609461 460 ntBASIC16.21■□□□□ 0.19
DKK3Q9UBP4 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 AC006449.6-201ENST00000612330 2296 ntBASIC16.21■□□□□ 0.19
DKK3Q9UBP4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.21■□□□□ 0.19
DKK3Q9UBP4 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
DKK3Q9UBP4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
DKK3Q9UBP4 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.21■□□□□ 0.18
DKK3Q9UBP4 CYP4F24P-201ENST00000586049 1580 ntBASIC16.21■□□□□ 0.18
DKK3Q9UBP4 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.21■□□□□ 0.18
DKK3Q9UBP4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
DKK3Q9UBP4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.21■□□□□ 0.18
DKK3Q9UBP4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms