Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AC079328.1-201ENST00000560358 952 ntBASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AC006449.6-201ENST00000612330 2296 ntBASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AC106886.4-201ENST00000623557 2502 ntBASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 SCARNA20.5-201ENST00000516991 142 ntBASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 MBP-227ENST00000526111 581 ntTSL 4 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 AC091271.1-201ENST00000611877 1162 ntBASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 AC015967.2-201ENST00000624092 234 ntBASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 AC006435.4-201ENST00000625037 234 ntBASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 AL356737.1-201ENST00000634391 234 ntBASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 FLII-221ENST00000578558 2377 ntTSL 5 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 NEU3-202ENST00000526068 431 ntTSL 2 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 CYGB-203ENST00000589145 788 ntTSL 3 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SHANK3Q9BYB0 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHANK3Q9BYB0 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 RAC2-202ENST00000401529 569 ntTSL 4 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 APOA2-204ENST00000464492 530 ntTSL 3 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 MIR4722-201ENST00000578292 60 ntBASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 GPR39-203ENST00000622084 900 ntTSL 5 BASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 AC006453.4-201ENST00000636949 1252 ntBASIC20.39■□□□□ 0.86
SHANK3Q9BYB0 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 KRT8P35-201ENST00000483942 1338 ntBASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 POLL-217ENST00000628479 1953 ntTSL 5 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms