Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 AC051619.7-201ENST00000568314 623 ntBASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 MIR4321-201ENST00000592276 80 ntBASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 AC007967.4-201ENST00000614700 386 ntBASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 DUX4L27-201ENST00000554796 1261 ntBASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 FLJ16779-201ENST00000612722 7638 ntBASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 AL391005.1-201ENST00000623953 2435 ntBASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.24■□□□□ 0.03
PTCHD1Q96NR3 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms